RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PRNTQ86SH4 94 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 ABHD17AQ96GS6 310 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 Q9H3A6 140 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 FAM208BQ5VWN6 2430 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.86□□□□□ -1.79
LIMA1-214ENST00000552783 TEX48A0A1B0GUV7 120 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 A0A1W2PPI3 338 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM213A2RRL7 107 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 SMKR1H3BMG3 65 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 K7EP34 96 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 IGHG3P01860 377 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 COL8A1P27658 744 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 BSPH1Q075Z2 132 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 SLC25A48Q6ZT89 311 aaKnown RBP3.86□□□□□ -1.79
LIMA1-214ENST00000552783 GOLT1AQ6ZVE7 132 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 BCL6BQ8N143 479 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-214ENST00000552783 C1orf162Q8NEQ5 155 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-214ENST00000552783 OR10AG1Q8NH19 301 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 SRSF12Q8WXF0 261 aaKnown RBP3.86□□□□□ -1.79
LIMA1-214ENST00000552783 DAZAP1Q96EP5 407 aaKnown RBP3.86□□□□□ -1.79
LIMA1-214ENST00000552783 SMIM12Q96EX1 92 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 ADTRPQ96IZ2 230 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 NPFFR1Q9GZQ6 430 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 GTSF1LQ9H1H1 148 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 AP5S1Q9NUS5 200 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 S4R3C0 116 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 VPS13CQ709C8 3753 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 PPIAL4EA0A075B759 164 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 TMSB15BA0A087X1C1 80 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 IGKV2D-26A0A0A0MRZ7 120 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 NPIPB6E9PJ23 425 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 RBP4P02753 201 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 PPIAL4FP0DN26 164 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 CNTFRP26992 372 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 CACNG7P62955 275 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 MTURNQ8N3F0 131 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 OR2K2Q8NGT1 345 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM186Q96B77 213 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 GAFA1Q96PS6 74 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 MS4A6AQ9H2W1 248 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 DKK4Q9UBT3 224 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 DKK2Q9UBU2 259 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 IGLV2-23P01705 113 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 FCGR2BP31994 310 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-214ENST00000552783 SUB1P53999 127 aaKnown RBP eCLIP3.85□□□□□ -1.79
LIMA1-214ENST00000552783 LYZP61626 148 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 MBNL2Q5VZF2 373 aaKnown RBP3.85□□□□□ -1.79
LIMA1-214ENST00000552783 Q86TA4 180 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 BOD1L2Q8IYS8 172 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 CACNG8Q8WXS5 425 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 RPUSD1Q9UJJ7 312 aaKnown RBP3.85□□□□□ -1.79
LIMA1-214ENST00000552783 ACACBO00763 2458 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 CSPG4Q6UVK1 2322 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 D6R8Y8 96 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 H3BRM9 83 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 IGLV1-44P01699 117 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 NMUP48645 174 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 FXYD2P54710 66 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 VMA21Q3ZAQ7 101 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 Q5PR19 223 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 AMN1Q8IY45 258 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 PRSS3P2Q8NHM4 247 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 VSTM2AQ8TAG5 236 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 IGFBPL1Q8WX77 278 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 SIGLEC8Q9NYZ4 499 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 ONECUT1Q9UBC0 465 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 HSPB8Q9UJY1 196 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 SPCS1Q9Y6A9 102 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 DOPEY2Q9Y3R5 2298 aa3.85□□□□□ -1.79
LIMA1-214ENST00000552783 PPIAL4CA0A0B4J2A2 164 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 A0A1W2PPM0 123 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-214ENST00000552783 M0R3E3 92 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 SEC11AP67812 179 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 RPL24P83731 157 aaKnown RBP3.84□□□□□ -1.79
LIMA1-214ENST00000552783 NHLH1Q02575 133 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 SMAGPQ0VAQ4 97 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 THAP8Q8NA92 274 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-214ENST00000552783 WFDC12Q8WWY7 111 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 C8orf49Q96NF6 230 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 NGBQ9NPG2 151 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 FAM215AQ9Y5M1 114 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 IGHV3-35A0A0C4DH35 117 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 A0A1B0GUT8 65 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 LY6HO94772 140 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 AZU1P20160 251 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 APOBEC3AP31941 199 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-214ENST00000552783 RBPJQ06330 500 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 C16orf54Q6UWD8 224 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 OR1L4Q8NGR5 311 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 LINC01560Q8TB33 94 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 RPEQ96AT9 228 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 FMC1Q96HJ9 113 aa3.84□□□□□ -1.79
LIMA1-214ENST00000552783 CHTOPQ9Y3Y2 248 aaKnown RBP3.84□□□□□ -1.79
LIMA1-214ENST00000552783 IGHV3OR16-8A0A075B7F1 116 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 SERTM2A0A1B0GWG4 89 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 SMAD7O15105 426 aaKnown RBP3.84□□□□□ -1.8
LIMA1-214ENST00000552783 INSL3P51460 131 aa3.84□□□□□ -1.8
LIMA1-214ENST00000552783 PAX8Q06710 450 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms