RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488		I3L521	148 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	SLC22A1	O15245	554 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	IGKV2D-40	P01614	121 aa	Predicted RBP	0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	PPBP	P02775	128 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	OR5G3	P0C626	314 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	METTL15P1	P0C7V9	234 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	TRGC1	P0CF51	173 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	CCR7	P32248	378 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	ASIP	P42127	132 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	MAP2K4	P45985	399 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	AQP4	P55087	323 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	HIST3H3	Q16695	136 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488		Q1T7F1	81 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	ARHGAP11B	Q3KRB8	267 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	COQ5	Q5HYK3	327 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	FAM27B	Q5VT28	67 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	FP248	Q71RG6	208 aa	Predicted RBP	0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	GID4	Q8IVV7	300 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	ZNF676	Q8N7Q3	588 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	TSTD1	Q8NFU3	115 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	C10orf105	Q8TEF2	133 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	CNBD2	Q96M20	576 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	RETNLB	Q9BQ08	111 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	FUT9	Q9Y231	359 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	TIMM22	Q9Y584	194 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	ALMS1	Q8TCU4	4167 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	ANAPC1	Q9H1A4	1944 aa		0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	DYNC1H1	Q14204	4646 aa	Known RBP	0.73	□□□□□ -2.29
PRKDC-210	ENST00000541488	RP1	P56715	2156 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	SDCBP	O00560	298 aa	Predicted RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	ORC5	O43913	435 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	TNFSF15	O95150	251 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	IGHV3-7	P01780	117 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	REG1B	P48304	166 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	CCL20	P78556	96 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	PRB3	Q04118	309 aa	Predicted RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	RPL18	Q07020	188 aa	Known RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	DEFB113	Q30KQ7	82 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	IBA57	Q5T440	356 aa	Known RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	FKBP1C	Q5VVH2	108 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	LPCAT4	Q643R3	524 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	MYO7B	Q6PIF6	2116 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	DHFR2	Q86XF0	187 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	C1orf158	Q8N1D5	194 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	OR8B3	Q8NGG8	313 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	PTH2	Q96A98	100 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	RMND5B	Q96G75	393 aa	Predicted RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	MRPS26	Q9BYN8	205 aa	Known RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	PAQR5	Q9NXK6	330 aa	Predicted RBP	0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	IL36B	Q9NZH7	164 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	LRP2	P98164	4655 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	EML6	Q6ZMW3	1958 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	SSPO	A2VEC9	5147 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	MYH6	P13533	1939 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	DNAH10	Q8IVF4	4471 aa		0.72	□□□□□ -2.29
PRKDC-210	ENST00000541488	IGKV3-7	A0A075B6H7	116 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	GGT3P	A6NGU5	568 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	FABP5P3	A8MUU1	101 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	EVPLL	A8MZ36	301 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	IBA57-AS1	B1ANH7	110 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	KCNK1	O00180	336 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	CCL16	O15467	120 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	PRM2	P04554	102 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	CALB1	P05937	261 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	HLA-DMB	P28068	263 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	ZNF80	P51504	273 aa	Predicted RBP	0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	IFITM2	Q01629	132 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	STX5	Q13190	355 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	GRK1	Q15835	563 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	MOG	Q16653	247 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	DEFB109B	Q30KR1	87 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	SFXN4	Q6P4A7	337 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	FAM173B	Q6P4H8	233 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488		Q6ZS49	121 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	OTUD6B	Q8N6M0	293 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	C11orf40	Q8WZ69	217 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	ERMAP	Q96PL5	475 aa	Predicted RBP	0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	OR52E6	Q96RD3	313 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	OR8D2	Q9GZM6	311 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	OR51I1	Q9H343	314 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	EFCAB1	Q9HAE3	211 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	XPNPEP1	Q9NQW7	623 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	LHFPL6	Q9Y693	200 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	VPS13D	Q5THJ4	4388 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	FAT1	Q14517	4588 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	SRRM2	Q9UQ35	2752 aa	Known RBP	0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	PLEC	Q15149	4684 aa	Known RBP	0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	WNK2	Q9Y3S1	2297 aa		0.71	□□□□□ -2.3
PRKDC-210	ENST00000541488	PLCE1	Q9P212	2302 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	POLE	Q07864	2286 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	TRBV20OR9-2	A0A075B6H5	130 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	SMIM23	A6NLE4	172 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	TRAPPC2L	H3BP13	241 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488		M0R036	132 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	TGOLN2	O43493	480 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	AHSA1	O95433	338 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	DEFA4	P12838	97 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	CD52	P31358	61 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	G6PC	P35575	357 aa		0.7	□□□□□ -2.3
PRKDC-210	ENST00000541488	TCL1A	P56279	114 aa		0.7	□□□□□ -2.3

Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms