RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 POP5Q969H6 163 aaKnown RBP0.23□□□□□ -2.37
VPS13A-213ENST00000539950 MUCL1Q96DR8 90 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 ZC2HC1AQ96GY0 325 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CEP19Q96LK0 163 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CARD19Q96LW7 228 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 OR2H1Q9GZK4 316 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CACYBPQ9HB71 228 aaKnown RBP0.23□□□□□ -2.37
VPS13A-213ENST00000539950 BIN3Q9NQY0 253 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 MED29Q9NX70 200 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 HSPB8Q9UJY1 196 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 OR52A1Q9UKL2 312 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 UFC1Q9Y3C8 167 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 COL24A1Q17RW2 1714 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 RP1P56715 2156 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 E9PCH4 1651 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 MYH7BA7E2Y1 1941 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 ERBINQ96RT1 1412 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 A0A0J9YY99 117 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 A0A1W2PPM0 123 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 K7EIL1 84 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 HIST1H2BKO60814 126 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 IFNA4P05014 189 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 HIST1H2BJP06899 126 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 CXCL1P09341 107 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 IDO1P14902 403 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 EFNA4P52798 201 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 CRYBA4P53673 196 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 ARPP19P56211 112 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 TCTAP57738 103 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 VBP1P61758 197 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 BASP1P80723 227 aaKnown RBP0.22□□□□□ -2.37
VPS13A-213ENST00000539950 KLRD1Q13241 179 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 LTC4SQ16873 150 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 RTL8BQ17RB0 113 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 SPRNQ5BIV9 151 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM14EPQ6UXP3 125 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 SBSPONQ8IVN8 264 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 CLECL1Q8IZS7 167 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 LINC00269Q8N2A0 174 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 ZNF431Q8TF32 576 aaPredicted RBP0.22□□□□□ -2.37
VPS13A-213ENST00000539950 DIRC1Q969H9 104 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 MCEEQ96PE7 176 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 HOPXQ9BPY8 73 aaPredicted RBP0.22□□□□□ -2.37
VPS13A-213ENST00000539950 CENPHQ9H3R5 247 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 LRTM1Q9HBL6 345 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM14CQ9P0S9 112 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 SS18L2Q9UHA2 77 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 RNF11Q9Y3C5 154 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 NUBP2Q9Y5Y2 271 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 PHRF1Q9P1Y6 1649 aaKnown RBP0.22□□□□□ -2.37
VPS13A-213ENST00000539950 SCN10AQ9Y5Y9 1956 aa0.22□□□□□ -2.37
VPS13A-213ENST00000539950 TECPR2O15040 1411 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 CNTRLQ7Z7A1 2325 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 CEP192Q8TEP8 1941 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TRBV7-6A0A0J9YX20 115 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TRDV1A0A1B0GX56 115 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 hDV103S1A0JD37 113 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 M0R233 179 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 GPR31O00270 319 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 BANF1O75531 89 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 CST7O76096 145 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 SERPINB1P30740 379 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 RPL35P42766 123 aaKnown RBP0.21□□□□□ -2.38
VPS13A-213ENST00000539950 FOXA3P55318 350 aaPredicted RBP0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TAS2R41P59536 307 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 HBBP68871 147 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 C3orf33Q6P1S2 294 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 GLIPR1L1Q6UWM5 242 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TOMM20LQ6UXN7 152 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 ANGPTL5Q86XS5 388 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 NEK7Q8TDX7 302 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 BORCS5Q969J3 196 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 RAB37Q96AX2 223 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 CHCHD1Q96BP2 118 aaKnown RBP0.21□□□□□ -2.38
VPS13A-213ENST00000539950 ZHX1-C8orf76Q96EF9 292 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 PBDC1Q9BVG4 233 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 MAP1LC3BQ9GZQ8 125 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TAF9BQ9HBM6 251 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 OTORQ9NRC9 128 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TAS2R7Q9NYW3 318 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TNFSF18Q9UNG2 199 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TCOF1Q13428 1488 aaKnown RBP0.21□□□□□ -2.38
VPS13A-213ENST00000539950 TNRC6AQ8NDV7 1962 aaKnown RBP0.21□□□□□ -2.38
VPS13A-213ENST00000539950 MYLKQ15746 1914 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 ALPK3Q96L96 1907 aa0.21□□□□□ -2.38
VPS13A-213ENST00000539950 WDR97A6NE52 1622 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 ZFC3H1O60293 1989 aaKnown RBP0.2□□□□□ -2.38
VPS13A-213ENST00000539950 EML6Q6ZMW3 1958 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 A0A1W2PRE2 83 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 F8W1H4 67 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 H3BQV1 296 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 H3BRM9 83 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 H7BYZ3 331 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 NCR3O14931 201 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 RER1O15258 196 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 LYRM1O43325 122 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 CST8O60676 142 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 IGHV3-30P01768 117 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 IGHV3-30-5P0DP03 117 aa0.2□□□□□ -2.38
VPS13A-213ENST00000539950 BCL2P10415 239 aa0.2□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms