RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 IGLV1-44P01699 117 aa13.15□□□□□ -0.3
PCDHA3-201ENST00000522353 DEFB130BP0DP73 79 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 DEFB130AP0DP74 79 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 A0A1W2PPI3 338 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 ZNF815PA8K554 130 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 IGHV3-73A0A0B4J1V6 119 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 VCYO14598 125 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 LAGE3Q14657 143 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 LOXP28300 417 aaPredicted RBP13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 NTF4P34130 210 aa13.14□□□□□ -0.31
PCDHA3-201ENST00000522353 IGLV3-9A0A075B6K5 115 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 LINC00158P58513 81 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 SHANK2-AS3Q9BTD1 123 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 RLFQ13129 1914 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 C15orf62A8K5M9 175 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 IGF2-ASQ6U949 168 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 Q6ZR03 302 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 SLX1AQ9BQ83 275 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 S100A7L2Q5SY68 101 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 RNF144BQ7Z419 303 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 LINC01551Q86U37 167 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 Q8TAT8 98 aa13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 NHP2Q9NX24 153 aaKnown RBP13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 PHF3Q92576 2039 aaKnown RBP13.13□□□□□ -0.31
PCDHA3-201ENST00000522353 TEX36Q5VZQ5 186 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 YPEL3P61236 119 aaPredicted RBP13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 TMEM249Q2WGJ8 235 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 LYZL1Q6UWQ5 148 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 Q71RC1 249 aaPredicted RBP13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 LINC00311Q8N616 119 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 TYMSP04818 313 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 JPT2Q9H910 190 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 SH2D1AO60880 128 aa13.12□□□□□ -0.31
PCDHA3-201ENST00000522353 TEX43Q6ZNM6 134 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 C5orf24Q7Z6I8 188 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 NDUFAF3Q9BU61 184 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 LINC00205P59089 165 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 MST1LQ2TV78 715 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 FAM90A2PQ658T7 463 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 H3BUT2 72 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 GZMBP10144 247 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 PAX2Q02962 417 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 PLXNA3P51805 1871 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 TRAV2A0A0B4J234 112 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 TDGF1P3P51864 188 aa13.11□□□□□ -0.31
PCDHA3-201ENST00000522353 TICRRQ7Z2Z1 1910 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 RHODO00212 210 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 APOC4P55056 127 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 MS4A6AQ9H2W1 248 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 MGAMO43451 1857 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 ELANEP08246 267 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 DAD1P61803 113 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 RASL10AQ92737 203 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 ZNF581Q9P0T4 197 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 ERCC8Q13216 396 aa13.1□□□□□ -0.31
PCDHA3-201ENST00000522353 ZNF833PQ6ZTB9 187 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 C1orf159Q96HA4 380 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 CST9LQ9H4G1 147 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 D6R8Y8 96 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 PRB4P10163 310 aaPredicted RBP13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 FHL1Q13642 323 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 G3V318 75 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 UBE2CO00762 179 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 HOXA3O43365 443 aaPredicted RBP13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 C1orf194Q5T5A4 169 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 SRSF4Q08170 494 aaKnown RBP13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 CD300EQ496F6 205 aaPredicted RBP13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 XCL2Q9UBD3 114 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 ZSWIM8A7E2V4 1837 aa13.09□□□□□ -0.31
PCDHA3-201ENST00000522353 GBF1Q92538 1859 aa13.08□□□□□ -0.31
PCDHA3-201ENST00000522353 ORAOV1Q8WV07 137 aa13.08□□□□□ -0.31
PCDHA3-201ENST00000522353 KAAG1Q9UBP8 84 aa13.08□□□□□ -0.31
PCDHA3-201ENST00000522353 IGFL4Q6B9Z1 124 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 C1orf122Q6ZSJ8 110 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 C14orf178Q8N769 122 aaPredicted RBP13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 FANCMQ8IYD8 2048 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 TMEM238C9JI98 176 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 C6orf226Q5I0X4 101 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 PLEKHB2Q96CS7 222 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 A0A0U1RRA0 63 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 NCR2O95944 276 aa13.08□□□□□ -0.32
PCDHA3-201ENST00000522353 NDUFA4O00483 81 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 HSD52Q0P140 79 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 DMRTC2Q8IXT2 367 aaPredicted RBP13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 HIST1H2BLQ99880 126 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 F5H768 121 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 SS18Q15532 418 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 TCTEX1D4Q5JR98 221 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 HS3ST6Q96QI5 342 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 ZNRD1Q9P1U0 126 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 PHLDA1Q8WV24 401 aaPredicted RBP13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 OR2K2Q8NGT1 345 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 DERL1Q9BUN8 251 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 NDUFA4L2Q9NRX3 87 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 TMEM14BQ9NUH8 114 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 KLF2Q9Y5W3 355 aaPredicted RBP13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 ZGRF1Q86YA3 2104 aa13.07□□□□□ -0.32
PCDHA3-201ENST00000522353 CFPP27918 469 aa13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 LSM4Q9Y4Z0 139 aaKnown RBP13.06□□□□□ -0.32
PCDHA3-201ENST00000522353 GTF3C1Q12789 2109 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms