RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 U3KQK5 164 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 HLA-DRB4X5D2U9 266 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARHGEF28Q8N1W1 1705 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ANKRD26Q9UPS8 1709 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MYH10P35580 1976 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ABCC3O15438 1527 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MEGF6O75095 1541 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ERICH3Q5RHP9 1530 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SBF1O95248 1867 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FER1L6Q2WGJ9 1857 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 COL27A1Q8IZC6 1860 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RTEL1-TNFRSF6BF6WH68 1400 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 DAPK1P53355 1430 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CRB1P82279 1406 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RRBP1Q9P2E9 1410 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAST2Q6P0Q8 1798 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 N4BP2Q86UW6 1770 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 USP54Q70EL1 1684 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 PCNX3Q9H6A9 2034 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TICRRQ7Z2Z1 1910 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LOXHD1Q8IVV2 1947 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 BAZ1AQ9NRL2 1556 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PXDNLA1KZ92 1463 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PLA2R1Q13018 1463 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 GAPVD1Q14C86 1478 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAGI2Q86UL8 1455 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TEX14Q8IWB6 1497 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PXDNQ92626 1479 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAGI1Q96QZ7 1491 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARHGAP35Q9NRY4 1499 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPHKAPQ2M3C7 1700 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRPM3Q9HCF6 1732 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIAA1551Q9HCM1 1747 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRIP11Q15643 1979 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SCN10AQ9Y5Y9 1956 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SMARCA4P51532 1647 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 OBSL1O75147 1896 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TSPOAP1O95153 1857 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIF26AQ9ULI4 1882 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV10-54A0A075B6I4 117 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV3-9A0A075B6K5 115 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1D-17A0A075B6S4 117 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV12-2A0A075B6T6 113 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3OR16-8A0A075B7F1 116 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV2A0A0B4J234 112 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV40A0A0B4J280 105 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PIGBOS1A0A0B4J2F0 54 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV1-18A0A0C4DH31 117 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1B0GU33 70 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPAARA0A1B0GVQ0 90 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TCRBV3S1A0A5B6 114 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 hDV103S1A0JD37 113 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C7orf66A4D0T2 115 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C19orf71A6NCJ1 209 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR51F1A6NGY5 319 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C11orf86A6NJI1 115 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C17orf98A8MV24 154 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 C16orf90A8MZG2 172 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 E7EQL1 145 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 H3BT86 120 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 H7C2G1 150 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 J3QLW9 94 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 K7EM74 188 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 APOC4-APOC2K7ER74 178 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 K7ERJ3 54 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 M0R233 179 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 M0R2P5 195 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCL25O15444 150 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 GNRH2O43555 120 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SYNGR2O43760 224 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF861PO60384 105 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR1I1O60431 355 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TIMM17BO60830 172 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 HYPMO75409 117 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 KLF7O75840 302 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SNAPC5O75971 98 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PROSCO94903 275 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1-17P01599 117 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRACP01848 142 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 APOC2P02655 101 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PMP2P02689 132 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CLPSP04118 112 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CD3DP04234 171 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC25A5P05141 298 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV4-1P06312 121 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CD2P06729 351 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CTSDP07339 412 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00032P0C843 101 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 BAALC-AS2P0C853 105 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF705BP0CI00 300 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ARL14EPLP0DKL9 152 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CRYGAP11844 174 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 IFITM1P13164 125 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCL4P13236 92 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF14P17017 642 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 MDKP21741 143 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 BRS3P32247 399 aa0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPL28P46779 137 aaKnown RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 FOXA3P55318 350 aaPredicted RBP0.36□□□□□ -2.35
RNU4-54P-201ENST00000516428 PCBD1P61457 104 aa0.36□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms