RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	RPUSD4	Q96CM3	377 aa	Known RBP	10.87	□□□□□ -0.67
LMNA-223	ENST00000515459	C20orf144	Q9BQM9	153 aa		10.87	□□□□□ -0.67
LMNA-223	ENST00000515459	PTTG2	Q9NZH5	202 aa		10.87	□□□□□ -0.67
LMNA-223	ENST00000515459	GAGE12B	A1L429	117 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	HYPM	O75409	117 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	GAGE7	O76087	117 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	RLN2	P04090	185 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	OR5G3	P0C626	314 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	GAGE12F	P0CL80	117 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	GAGE12G	P0CL81	117 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	GAGE12I	P0CL82	117 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	PRB4	P10163	310 aa	Predicted RBP	10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	LINC00315	P59091	139 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	TMEM128	Q5BJH2	165 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	CYP2G1P	Q6ZSU1	146 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	ACOT7L	Q6ZUV0	252 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	CCDC28A	Q8IWP9	274 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	LYPD1	Q8N2G4	141 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	PGPEP1	Q9NXJ5	209 aa		10.86	□□□□□ -0.67
LMNA-223	ENST00000515459	SMCO3	A2RU48	225 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	SNURFL	B1AK76	121 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	LINC00869	P0C866	280 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	TMED4	Q7Z7H5	227 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	S100A7A	Q86SG5	101 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	LRTM2	Q8N967	370 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	STRAP	Q9Y3F4	350 aa	Known RBP	10.85	□□□□□ -0.67
LMNA-223	ENST00000515459	HERC1	Q15751	4861 aa		10.85	□□□□□ -0.67
LMNA-223	ENST00000515459		H3BP45	60 aa		10.84	□□□□□ -0.67
LMNA-223	ENST00000515459	EREG	O14944	169 aa		10.84	□□□□□ -0.67
LMNA-223	ENST00000515459	PLP1	P60201	277 aa		10.84	□□□□□ -0.67
LMNA-223	ENST00000515459	KIR3DS1	Q14943	382 aa		10.84	□□□□□ -0.67
LMNA-223	ENST00000515459		Q6ZRN7	208 aa	Predicted RBP	10.84	□□□□□ -0.67
LMNA-223	ENST00000515459	ANXA7	P20073	488 aa	Known RBP	10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	VAMP1	P23763	118 aa		10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	XG	P55808	180 aa		10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	SELENOT	P62341	195 aa		10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	CDPF1	Q6NVV7	123 aa		10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	RSL24D1	Q9UHA3	163 aa	Known RBP	10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	RNF24	Q9Y225	148 aa		10.83	□□□□□ -0.68
LMNA-223	ENST00000515459	PMS2P5	A8MQ11	134 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	CXCL2	P19875	107 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	ERVFC1-1	P60608	527 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	SPCS2	Q15005	226 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459		Q5VSD8	79 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	GFI1B	Q5VTD9	330 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	LCN15	Q6UWW0	184 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	FRZB	Q92765	325 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	SLC50A1	Q9BRV3	221 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	ARL6	Q9H0F7	186 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	TMPRSS5	Q9H3S3	457 aa		10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	ZNF331	Q9NQX6	463 aa	Predicted RBP	10.82	□□□□□ -0.68
LMNA-223	ENST00000515459	MRPS12	O15235	138 aa	Known RBP	10.81	□□□□□ -0.68
LMNA-223	ENST00000515459	SIVA1	O15304	175 aa		10.81	□□□□□ -0.68
LMNA-223	ENST00000515459	FAU	P35544	74 aa	Known RBP	10.81	□□□□□ -0.68
LMNA-223	ENST00000515459	FUS	P35637	526 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
LMNA-223	ENST00000515459	CCDC190	Q86UF4	302 aa		10.81	□□□□□ -0.68
LMNA-223	ENST00000515459	PARD6G	Q9BYG4	376 aa	Predicted RBP	10.81	□□□□□ -0.68
LMNA-223	ENST00000515459	ARV1	Q9H2C2	271 aa		10.81	□□□□□ -0.68
LMNA-223	ENST00000515459		A0A096LPF7	62 aa		10.8	□□□□□ -0.68
LMNA-223	ENST00000515459	HOXB5	P09067	269 aa		10.8	□□□□□ -0.68
LMNA-223	ENST00000515459	DAZ2	Q13117	558 aa	Known RBP	10.8	□□□□□ -0.68
LMNA-223	ENST00000515459	PATE2	Q6UY27	113 aa		10.8	□□□□□ -0.68
LMNA-223	ENST00000515459	VSIG2	Q96IQ7	327 aa		10.8	□□□□□ -0.68
LMNA-223	ENST00000515459	SMIM18	P0DKX4	95 aa		10.79	□□□□□ -0.68
LMNA-223	ENST00000515459		Q6ZTI0	123 aa		10.79	□□□□□ -0.68
LMNA-223	ENST00000515459	NPVF	Q9HCQ7	196 aa		10.79	□□□□□ -0.68
LMNA-223	ENST00000515459	PSENEN	Q9NZ42	101 aa		10.79	□□□□□ -0.68
LMNA-223	ENST00000515459	TRGV2	A0A075B6R0	118 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	TRAV12-3	A0A0B4J271	114 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	PRAC2	D3DTV9	90 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459		J3KRW8	73 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459		K7EPK0	472 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	SFT2D2	O95562	160 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	IFNA5	P01569	189 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	SNRPC	P09234	159 aa	Known RBP	10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	RRAS2	P62070	204 aa	Predicted RBP	10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	ID3	Q02535	119 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	PPP1R1A	Q13522	171 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	PXDC1	Q5TGL8	231 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	BPIFA4P	Q86YQ2	179 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	C18orf15	Q96N68	181 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	PYGO2	Q9BRQ0	406 aa		10.78	□□□□□ -0.68
LMNA-223	ENST00000515459	FABP12	A6NFH5	140 aa		10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	POLR2G	P62487	172 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	TEPP	Q6URK8	271 aa		10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	LINC00305	Q7Z4B0	112 aa		10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	SOST	Q9BQB4	213 aa		10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	SLC25A21	Q9BQT8	299 aa	Predicted RBP	10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	CCDC59	Q9P031	241 aa	Known RBP	10.77	□□□□□ -0.69
LMNA-223	ENST00000515459	FNDC10	F2Z333	226 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	SLC17A3	O00476	420 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	NXPH4	O95158	308 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	CT45A10	P0DMU9	189 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	LEP	P41159	167 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	AP3S2	P59780	193 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	KRTAP10-1	P60331	282 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	SLC38A11	Q08AI6	406 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	NFE4	Q86UQ8	179 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	DYNC2LI1	Q8TCX1	351 aa		10.76	□□□□□ -0.69
LMNA-223	ENST00000515459	ZNF431	Q8TF32	576 aa	Predicted RBP	10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms