RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144		A0A1B0GWJ7	208 aa		11.65	□□□□□ -0.55
TRIO-222	ENST00000515144	TCRA	P04437	139 aa		11.65	□□□□□ -0.55
TRIO-222	ENST00000515144	TRAV2	A0A0B4J234	112 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	ZNF98	A6NK75	572 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	SSBP2	P81877	361 aa	Predicted RBP	11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	DAZ1	Q9NQZ3	744 aa	Known RBP	11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	STAG3L2	P0CL84	134 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	PKIA	P61925	76 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	DEFB112	Q30KQ8	113 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	CLPSL2	Q6UWE3	100 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	C5orf42	Q9H799	3197 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	IGLV2-23	P01705	113 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	WFDC1	Q9HC57	220 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	FABP2	P12104	132 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	TREML4	Q6UXN2	200 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	GGTLC1	Q9BX51	225 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	IZUMO1R	A6ND01	250 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	S100A7L2	Q5SY68	101 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	ATG2A	Q2TAZ0	1938 aa		11.64	□□□□□ -0.55
TRIO-222	ENST00000515144	TRBV9	A0A0B4J1U6	114 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	RBMY1B	A6NDE4	496 aa	Known RBP	11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	RBMY1E	A6NEQ0	496 aa	Known RBP	11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	RBMY1D	P0C7P1	496 aa	Known RBP	11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	RBMY1A1	P0DJD3	496 aa	Known RBP	11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	RBMY1C	P0DJD4	496 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	NTF4	P34130	210 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	ZNF524	Q96C55	264 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144		Q6ZR03	302 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	ADM	P35318	185 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	C1QTNF4	Q9BXJ3	329 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	ZNF138	P52744	262 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	DIAPH2-AS1	Q14236	149 aa		11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	RSPO3	Q9BXY4	272 aa	Predicted RBP	11.63	□□□□□ -0.55
TRIO-222	ENST00000515144	C14orf178	Q8N769	122 aa	Predicted RBP	11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	CST9L	Q9H4G1	147 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	COL5A1-AS1	Q5SY13	56 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	C1orf159	Q96HA4	380 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	GAGE10	A6NGK3	116 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	TYMS	P04818	313 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	OCC1	Q8TAD7	63 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144		A0A1W2PPI3	338 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	GAGE12B	A1L429	117 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	OOSP1	A8MZH6	123 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	GAGE7	O76087	117 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	GAGE12F	P0CL80	117 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	GAGE12G	P0CL81	117 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	GAGE12I	P0CL82	117 aa		11.62	□□□□□ -0.55
TRIO-222	ENST00000515144	FOXL1	Q12952	345 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	NHLRC3	Q5JS37	347 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	SLC25A34	Q6PIV7	304 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	DMRTC2	Q8IXT2	367 aa	Predicted RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	SPRN	Q5BIV9	151 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	TPSG1	Q9NRR2	321 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	LSM4	Q9Y4Z0	139 aa	Known RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	TRAV13-1	A0A0B4J241	112 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	RPL36A	P83881	106 aa	Known RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	SRSF3	P84103	164 aa	Known RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	RPL36AL	Q969Q0	106 aa	Known RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	SMKR1	H3BMG3	65 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	CCL24	O00175	119 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	CEACAM8	P31997	349 aa	Predicted RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	SH2D1A	O60880	128 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	IGHV4-38-2	P0DP08	117 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	HOXB4	P17483	251 aa	Predicted RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	APOC4	P55056	127 aa		11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	RPL23	P62829	140 aa	Known RBP	11.61	□□□□□ -0.55
TRIO-222	ENST00000515144	SRP19	P09132	144 aa	Known RBP	11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	PAX9	P55771	341 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	SHISA9	B4DS77	424 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	TOMM40	O96008	361 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	IGKV1-5	P01602	117 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	C8orf86	Q6ZUL3	223 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	OR5A1	Q8NGJ0	315 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	TRGV9	Q99603	122 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	WDR86	Q86TI4	376 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	IFT22	Q9H7X7	185 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	CYSLTR1	Q9Y271	337 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	PIEZO2	Q9H5I5	2752 aa		11.6	□□□□□ -0.55
TRIO-222	ENST00000515144	IGLV3-9	A0A075B6K5	115 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	NDUFB8	O95169	186 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	NAV3	Q8IVL0	2385 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	MMP23A	O75900	390 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	SMIM13	P0DJ93	91 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	PLA2G5	P39877	138 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	IGF2BP2-AS1	Q96M15	143 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	CCL20	P78556	96 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	DERL1	Q9BUN8	251 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	CUL9	Q8IWT3	2517 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	C8orf49	Q96NF6	230 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	BTC	P35070	178 aa		11.59	□□□□□ -0.55
TRIO-222	ENST00000515144	RNF222	A6NCQ9	220 aa		11.58	□□□□□ -0.56
TRIO-222	ENST00000515144	TSPAN13	O95857	204 aa		11.58	□□□□□ -0.56
TRIO-222	ENST00000515144		F2Z2F3	143 aa		11.58	□□□□□ -0.56
TRIO-222	ENST00000515144	MST1L	Q2TV78	715 aa		11.58	□□□□□ -0.56
TRIO-222	ENST00000515144	AZU1	P20160	251 aa		11.58	□□□□□ -0.56
TRIO-222	ENST00000515144	PLP1	P60201	277 aa		11.58	□□□□□ -0.56
TRIO-222	ENST00000515144	CD300E	Q496F6	205 aa	Predicted RBP	11.58	□□□□□ -0.56
TRIO-222	ENST00000515144	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.58	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms