RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CCL16O15467 120 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 IL9P15248 144 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 S100A11P31949 105 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 RPL35P42766 123 aaKnown RBP2.44□□□□□ -2.02
NUP54-215ENST00000514313 C2orf82Q6UX34 121 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 PATE1Q8WXA2 126 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 HYLS1Q96M11 299 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 NDUFAF1Q9Y375 327 aa2.44□□□□□ -2.02
NUP54-215ENST00000514313 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
NUP54-215ENST00000514313 GNG14A0A1W2PPG7 69 aa2.43□□□□□ -2.02
NUP54-215ENST00000514313 GABARAPH6UMI1 98 aa2.43□□□□□ -2.02
NUP54-215ENST00000514313 BCL2P10415 239 aa2.43□□□□□ -2.02
NUP54-215ENST00000514313 GGACTQ9BVM4 153 aa2.43□□□□□ -2.02
NUP54-215ENST00000514313 LAMTOR2Q9Y2Q5 125 aa2.43□□□□□ -2.02
NUP54-215ENST00000514313 PRRC2BQ5JSZ5 2229 aaKnown RBP2.43□□□□□ -2.02
NUP54-215ENST00000514313 DIDO1Q9BTC0 2240 aaKnown RBP2.43□□□□□ -2.02
NUP54-215ENST00000514313 N4BP2Q86UW6 1770 aaPredicted RBP2.42□□□□□ -2.02
NUP54-215ENST00000514313 A0A087WSZ3 146 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 OR2T8A6NH00 312 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 ANGP03950 147 aaKnown RBP2.42□□□□□ -2.02
NUP54-215ENST00000514313 TMEM128Q5BJH2 165 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 ZNF833PQ6ZTB9 187 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 Q8TAT8 98 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 THEM6Q8WUY1 208 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 MUCL1Q96DR8 90 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 ZFP30Q9Y2G7 519 aa2.42□□□□□ -2.02
NUP54-215ENST00000514313 TRBV6-7A0A0A0MS04 114 aa2.41□□□□□ -2.02
NUP54-215ENST00000514313 M0R2N4 97 aa2.41□□□□□ -2.02
NUP54-215ENST00000514313 ERC2-IT1O76042 136 aa2.41□□□□□ -2.02
NUP54-215ENST00000514313 EIF3IQ13347 325 aaKnown RBP2.41□□□□□ -2.02
NUP54-215ENST00000514313 HRCT1Q6UXD1 115 aa2.41□□□□□ -2.02
NUP54-215ENST00000514313 TNRC6BQ9UPQ9 1833 aaKnown RBP2.4□□□□□ -2.02
NUP54-215ENST00000514313 NCAPD3P42695 1498 aa2.4□□□□□ -2.02
NUP54-215ENST00000514313 MUC6Q6W4X9 2439 aa2.4□□□□□ -2.02
NUP54-215ENST00000514313 KPNA4O00629 521 aaPredicted RBP2.4□□□□□ -2.03
NUP54-215ENST00000514313 INE1O15225 51 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 FABP2P12104 132 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 S100GP29377 79 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 TMEM14EPQ6UXP3 125 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 TAC4Q86UU9 113 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 FAM216BQ8N7L0 139 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 OBSCN-AS1Q96MR7 158 aa2.4□□□□□ -2.03
NUP54-215ENST00000514313 RPL7P18124 248 aaKnown RBP2.39□□□□□ -2.03
NUP54-215ENST00000514313 MPV17LQ2QL34 196 aa2.39□□□□□ -2.03
NUP54-215ENST00000514313 FAM74A1Q5RGS3 127 aa2.39□□□□□ -2.03
NUP54-215ENST00000514313 KRTAP26-1Q6PEX3 210 aa2.39□□□□□ -2.03
NUP54-215ENST00000514313 TOMM20LQ6UXN7 152 aa2.39□□□□□ -2.03
NUP54-215ENST00000514313 TAF9BQ9HBM6 251 aa2.39□□□□□ -2.03
NUP54-215ENST00000514313 TNS3Q68CZ2 1445 aa2.39□□□□□ -2.03
NUP54-215ENST00000514313 TRIOBPQ9H2D6 2365 aa2.38□□□□□ -2.03
NUP54-215ENST00000514313 TRAV27A0A087WT01 109 aa2.38□□□□□ -2.03
NUP54-215ENST00000514313 hDV103S1A0JD37 113 aa2.38□□□□□ -2.03
NUP54-215ENST00000514313 SAMD13Q5VXD3 122 aa2.38□□□□□ -2.03
NUP54-215ENST00000514313 LINC00052Q96N35 136 aa2.38□□□□□ -2.03
NUP54-215ENST00000514313 LAMB4A4D0S4 1761 aa2.38□□□□□ -2.03
NUP54-215ENST00000514313 TRBV6-4A0A1B0GX49 114 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 PRORSD1PA6NEY8 169 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 MT-ND6P03923 174 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 NBEAP1P0C6P0 100 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 CXCL8P10145 99 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 ZNF25P17030 456 aaPredicted RBP2.37□□□□□ -2.03
NUP54-215ENST00000514313 POLR2HP52434 150 aaKnown RBP2.37□□□□□ -2.03
NUP54-215ENST00000514313 BORCS5Q969J3 196 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 TCEAL2Q9H3H9 227 aaPredicted RBP2.37□□□□□ -2.03
NUP54-215ENST00000514313 ORMDL1Q9P0S3 153 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 TRAPPC2LQ9UL33 140 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 MED31Q9Y3C7 131 aa2.37□□□□□ -2.03
NUP54-215ENST00000514313 RTL9Q8NET4 1388 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 TRPM1Q7Z4N2 1603 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 TSTD3H0UI37 97 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 CCL25O15444 150 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 LYRM1O43325 122 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 SDC2P34741 201 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 ARPINQ7Z6K5 226 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 FAM19A2Q8N3H0 131 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 LRRC18Q8N456 261 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 OR9Q1Q8NGQ5 310 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 CCDC115Q96NT0 180 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 ADGBQ8N7X0 1667 aa2.36□□□□□ -2.03
NUP54-215ENST00000514313 KDM6AO15550 1401 aaPredicted RBP2.35□□□□□ -2.03
NUP54-215ENST00000514313 TRAPPC8Q9Y2L5 1435 aa2.35□□□□□ -2.03
NUP54-215ENST00000514313 IGHV1-58A0A0C4DH39 117 aa2.35□□□□□ -2.03
NUP54-215ENST00000514313 FAM107AO95990 144 aa2.35□□□□□ -2.03
NUP54-215ENST00000514313 AKAP14Q86UN6 197 aa2.35□□□□□ -2.03
NUP54-215ENST00000514313 ODF3Q96PU9 254 aa2.35□□□□□ -2.03
NUP54-215ENST00000514313 SPRNQ5BIV9 151 aa2.34□□□□□ -2.03
NUP54-215ENST00000514313 GDF5OSQ5U4N7 250 aa2.34□□□□□ -2.03
NUP54-215ENST00000514313 ADGRB2O60241 1585 aa2.34□□□□□ -2.03
NUP54-215ENST00000514313 TNRC6AQ8NDV7 1962 aaKnown RBP2.34□□□□□ -2.04
NUP54-215ENST00000514313 UNC13AQ9UPW8 1703 aa2.34□□□□□ -2.04
NUP54-215ENST00000514313 FRMPD1Q5SYB0 1578 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 KIAA1549Q9HCM3 1950 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 ZCCHC11Q5TAX3 1644 aaKnown RBP2.33□□□□□ -2.04
NUP54-215ENST00000514313 C5orf67F2Z3F1 127 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 GKN2Q86XP6 184 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 DIRC1Q969H9 104 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 LINC00526Q96FQ7 95 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 MRPL57Q9BQC6 102 aaKnown RBP2.33□□□□□ -2.04
NUP54-215ENST00000514313 GINS2Q9Y248 185 aa2.33□□□□□ -2.04
NUP54-215ENST00000514313 ANKRD30AQ9BXX3 1397 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms