RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 Q9H3A6 140 aa8.72□□□□□ -1.01
SH3RF1-203ENST00000508685 MRPL36Q9P0J6 103 aaKnown RBP8.72□□□□□ -1.01
SH3RF1-203ENST00000508685 LAMTOR2Q9Y2Q5 125 aa8.72□□□□□ -1.01
SH3RF1-203ENST00000508685 ABCA2Q9BZC7 2435 aa8.72□□□□□ -1.01
SH3RF1-203ENST00000508685 HOXB4P17483 251 aaPredicted RBP8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 CAMPP49913 170 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 LMO4P61968 165 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 GNG5P63218 68 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 DYNAPQ8N1N2 210 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 CFHR4Q92496 578 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 CCL19Q99731 98 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 NDFIP1Q9BT67 221 aa8.71□□□□□ -1.01
SH3RF1-203ENST00000508685 NPIPB6E9PJ23 425 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 CRXO43186 299 aaPredicted RBP8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 COL8A1P27658 744 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 BATFQ16520 125 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 RUSC1-AS1Q66K80 236 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 RNASEKQ6P5S7 137 aaKnown RBP8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 LYPD1Q8N2G4 141 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 TMEM70Q9BUB7 260 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 UNC79Q9P2D8 2635 aa8.71□□□□□ -1.02
SH3RF1-203ENST00000508685 A0A1B0GW15 77 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 CEACAM3P40198 252 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 FOXA3P55318 350 aaPredicted RBP8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 PLGLAQ15195 96 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 HIST2H2BCQ6DN03 193 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 C1orf122Q6ZSJ8 110 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 KIR3DL3Q8N743 410 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 SIRPDQ9H106 197 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 NBPF19A0A087WUL8 3843 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 IGHV2-70DA0A0C4DH43 119 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 C2orf70A6NJV1 201 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 TEX22C9J3V5 150 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 K7EQM0 130 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 HAX1O00165 279 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 OR2D3Q8NGH3 330 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 ORAOV1Q8WV07 137 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 WNT10AQ9GZT5 417 aa8.7□□□□□ -1.02
SH3RF1-203ENST00000508685 CHEK1O14757 476 aa8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 TOX4O94842 621 aa8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 IGLC1P0CG04 106 aa8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 TSPOP30536 169 aa8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 HES1Q14469 280 aa8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 SRSF12Q8WXF0 261 aaKnown RBP8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 RASL11BQ9BPW5 248 aa8.69□□□□□ -1.02
SH3RF1-203ENST00000508685 ABCA1O95477 2261 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 VWC2LB2RUY7 222 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 PSG1P11464 419 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 EBLN2Q6P2I7 272 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 C16orf54Q6UWD8 224 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 TCF24Q7RTU0 167 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 BPIFA4PQ86YQ2 179 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 NRGNQ92686 78 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 SSBP4Q9BWG4 385 aaPredicted RBP8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 SLC25A39Q9BZJ4 359 aaPredicted RBP8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 ST20Q9HBF5 79 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 ZANQ9Y493 2812 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 LOC102724200A0A096LPH7 203 aaPredicted RBP8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 IGHV3-21A0A0B4J1V1 117 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 NBR2O15453 112 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 RIGQ13278 110 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 Q6AWC8 147 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 Q86TA4 180 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 TMEM75Q8N9X5 138 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 GATD1Q8NB37 220 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 GTSF1Q8WW33 167 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 RPH3ALQ9UNE2 315 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 ABCA12Q86UK0 2595 aa8.68□□□□□ -1.02
SH3RF1-203ENST00000508685 TRAV30A0A087WSZ9 112 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 I3L2K1 104 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 LEPROTL1O95214 131 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 COX6B1P14854 86 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 LYZP61626 148 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 Q56UQ5 140 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 OR4F17Q8NGA8 305 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 PGLYRP4Q96LB8 373 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 TMEM191AQ9H0A3 160 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 NOTCH2Q04721 2471 aa8.67□□□□□ -1.02
SH3RF1-203ENST00000508685 ANKRD17O75179 2603 aaKnown RBP8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 IGHV4-61A0A0C4DH41 118 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 CNIH1O95406 144 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 PET117Q6UWS5 81 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 LINC00322Q6ZN03 302 aaPredicted RBP8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 ARL6IP6Q8N6S5 226 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 SPOCK3Q9BQ16 436 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 SHANK2-AS3Q9BTD1 123 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 HSPB8Q9UJY1 196 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 SERTM2A0A1B0GWG4 89 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 HSBP1L1C9JCN9 74 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 SYS1-DBNDD2H3BUS1 97 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 NDUFA3O95167 84 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 NPSP0C0P6 89 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 SAA4P35542 130 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 ATP5J2P56134 94 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 LCN12Q6JVE5 192 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 CCDC144NLQ6NUI1 221 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 STPG4Q8N801 248 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 NPBQ8NG41 125 aa8.66□□□□□ -1.02
SH3RF1-203ENST00000508685 AJUBAQ96IF1 538 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms