RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 ROS1P08922 2347 aa13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 RNF138Q8WVD3 245 aa13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 CHD3Q12873 2000 aaKnown RBP13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 SPINK8P0C7L1 97 aa13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 PLSCR4Q9NRQ2 329 aa13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 TMEM158Q8WZ71 300 aa13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 LSM4Q9Y4Z0 139 aaKnown RBP13.94□□□□□ -0.18
HMGXB3-201ENST00000502717 IGKV2-40A0A087WW87 121 aaPredicted RBP13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 IGKV2D-40P01614 121 aaPredicted RBP13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 NDUFA4L2Q9NRX3 87 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 TSSC4Q9Y5U2 329 aaPredicted RBP13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 IGHV3-66A0A0C4DH42 116 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 H7C1H1 209 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 NBL1P41271 181 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 FAM104BQ5XKR9 115 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 CSTL1Q9H114 145 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 GEMIN7Q9H840 131 aaKnown RBP13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 CD24P25063 80 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 ZNF562Q6V9R5 426 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 PSMB11A5LHX3 300 aa13.93□□□□□ -0.18
HMGXB3-201ENST00000502717 IGHV3OR16-8A0A075B7F1 116 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 BSPH1Q075Z2 132 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 IGHV3-49A0A0A0MS15 119 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 TMEM200BQ69YZ2 307 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 TMEM75Q8N9X5 138 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 TMEM238C9JI98 176 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 C15orf65H3BRN8 121 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 CFHR2P36980 270 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 CD300EQ496F6 205 aaPredicted RBP13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 GAFA1Q96PS6 74 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 ABCA1O95477 2261 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 PAX1P15863 534 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 FER1L5A0AVI2 2057 aa13.92□□□□□ -0.18
HMGXB3-201ENST00000502717 IGKV3-15P01624 115 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 PGPEP1Q9NXJ5 209 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 KRTAP27-1Q3LI81 207 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 NPFFR1Q9GZQ6 430 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 RNF5Q99942 180 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 SMKR1H3BMG3 65 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 RHOGP84095 191 aa13.91□□□□□ -0.18
HMGXB3-201ENST00000502717 ACACBO00763 2458 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 TRAV8-4A0A0B4J246 113 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 SCGB1A1P11684 91 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 ZNF503-AS2A6NEH8 195 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 RRN3P1Q2M238 152 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 ERG28Q9UKR5 140 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 PTPRQQ9UMZ3 2332 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 PRSS46E5RG02 174 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 PDE6HQ13956 83 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 ATP6V0BQ99437 205 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 SHANK2-AS3Q9BTD1 123 aa13.9□□□□□ -0.18
HMGXB3-201ENST00000502717 TRAV21A0A0B4J279 112 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 GAGE12HA6NDE8 117 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 ETDBQ3ZM63 59 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 SLC25A15Q9Y619 301 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 PCNX1Q96RV3 2341 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 PIEZO1Q92508 2521 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 LY6G6EA0A0G2JKS1 128 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 POU2AF1Q16633 256 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 U3KQA8 63 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 A0A1W2PPI3 338 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 IGHV1-8P0DP01 117 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 FXYD5Q96DB9 178 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 ZNF747Q9BV97 191 aa13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 ZFHX2Q9C0A1 2572 aaPredicted RBP13.89□□□□□ -0.19
HMGXB3-201ENST00000502717 IGHV3OR16-10A0A075B7F0 116 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 DDB2Q92466 427 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 SIGLEC9Q9Y336 463 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 TMEM213A2RRL7 107 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 TNFRSF6BO95407 300 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 MRAP2Q96G30 205 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 FGF23Q9GZV9 251 aaPredicted RBP13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 PRB4P10163 310 aaPredicted RBP13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 CLEC19AQ6UXS0 136 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 MDS2Q8NDY4 140 aa13.88□□□□□ -0.19
HMGXB3-201ENST00000502717 CEACAM4O75871 244 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 IGHV4-39P01824 125 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 AZU1P20160 251 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 ODF3L1Q8IXM7 274 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 TIMM23O14925 209 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 C19orf54Q5BKX5 351 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 SIGLEC8Q9NYZ4 499 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 TRAV40A0A0B4J280 105 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 MEIG1Q5JSS6 88 aa13.87□□□□□ -0.19
HMGXB3-201ENST00000502717 K7ENP7 123 aa13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 RAX2Q96IS3 184 aa13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 IGHV1-3A0A0C4DH29 117 aa13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 CRXO43186 299 aaPredicted RBP13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 HEATR1Q9H583 2144 aaKnown RBP13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 TRAV2A0A0B4J234 112 aa13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 PRSS57Q6UWY2 283 aa13.86□□□□□ -0.19
HMGXB3-201ENST00000502717 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 TAX1BP3O14907 124 aa13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 RNASE4P34096 147 aaKnown RBP13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 ZNF134P52741 427 aa13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 Q8TAT8 98 aa13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 VGLL1Q99990 258 aa13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 DNAL4O96015 105 aa13.85□□□□□ -0.19
HMGXB3-201ENST00000502717 PRTN3P24158 256 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms