RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 C3orf56Q8N813 242 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 ANAPC10Q9UM13 185 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 MT-ATP8P03928 68 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 TIMM21Q9BVV7 248 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 UNC13CQ8NB66 2214 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 PATJQ8NI35 1801 aa10.83□□□□□ -0.68
USP40-208ENST00000450966 C17orf100A8MU93 164 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 LY6DQ14210 128 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 GLMPQ8WWB7 406 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 C4orf51C9J302 202 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 THBDP07204 575 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 FOXA2Q9Y261 457 aaPredicted RBP10.82□□□□□ -0.68
USP40-208ENST00000450966 CABIN1Q9Y6J0 2220 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 K7ENP7 123 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 RFPL3SP0C7P2 107 aa10.82□□□□□ -0.68
USP40-208ENST00000450966 RPUSD1Q9UJJ7 312 aaKnown RBP10.82□□□□□ -0.68
USP40-208ENST00000450966 VCYO14598 125 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 Q6ZS49 121 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 RASL10AQ92737 203 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 ARMS2P0C7Q2 107 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 HLA-DRB4P13762 266 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 IL15RAQ13261 267 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 C9orf106Q8NAJ2 232 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 HLA-DRB4X5D2U9 266 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 TRBV25-1A0A075B6N4 114 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 J3QKU1 62 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 ZNF497Q6ZNH5 498 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 LYPD1Q8N2G4 141 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 F8VRH5 84 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 ZNRF1Q8ND25 227 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 ZNF625Q96I27 306 aaPredicted RBP10.81□□□□□ -0.68
USP40-208ENST00000450966 C7orf69Q9H7B7 122 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 ASXL3Q9C0F0 2248 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 C20orf78Q9BR46 151 aa10.81□□□□□ -0.68
USP40-208ENST00000450966 Q86TA4 180 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 PCP2Q8IVA1 136 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 CYYR1Q96J86 154 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 IGKV1D-43A0A0B4J1Z2 117 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 TMEM141Q96I45 108 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 SEC16AO15027 2179 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 NTF4P34130 210 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 C3orf22Q8N5N4 141 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 PRSS22Q9GZN4 317 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 DPH3P1Q9H4G8 78 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 IGKV3OR2-268A0A0C4DH90 116 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 PRSS46E5RG02 174 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 SH2D1AO60880 128 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 SRSF2Q01130 221 aaKnown RBP10.8□□□□□ -0.68
USP40-208ENST00000450966 C1orf195Q5TG92 126 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 Q6ZS92 163 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 LINC00479Q96M42 142 aa10.8□□□□□ -0.68
USP40-208ENST00000450966 PIKFYVEQ9Y2I7 2098 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 IGKV3-20P01619 116 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 EFNA4P52798 201 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 TMEM219Q86XT9 240 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 TRIOBPQ9H2D6 2365 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 RP1P56715 2156 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 TIMM23O14925 209 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 IGHV1-2P23083 117 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 CMC4P56277 68 aaPredicted RBP10.79□□□□□ -0.68
USP40-208ENST00000450966 MRPL35Q9NZE8 188 aaKnown RBP10.79□□□□□ -0.68
USP40-208ENST00000450966 C15orf62A8K5M9 175 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 NDUFS7O75251 213 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 RNF125Q96EQ8 232 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 SMIM9A6NGZ8 99 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 SMKR1H3BMG3 65 aa10.79□□□□□ -0.68
USP40-208ENST00000450966 DUTP33316 252 aaKnown RBP10.79□□□□□ -0.68
USP40-208ENST00000450966 IGKV1D-33P01593 117 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 IGKV1-33P01594 117 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 IGHV3-35A0A0C4DH35 117 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 LINC00158P58513 81 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 ITLN2Q8WWU7 325 aaPredicted RBP10.78□□□□□ -0.68
USP40-208ENST00000450966 SPTBP11277 2137 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 FXYD2P54710 66 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 LYZL4Q96KX0 146 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 A0A0U1RRA0 63 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 LINC00312Q9Y6C7 94 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 U3KQE9 123 aa10.78□□□□□ -0.68
USP40-208ENST00000450966 CHD3Q12873 2000 aaKnown RBP10.77□□□□□ -0.68
USP40-208ENST00000450966 CFHR2P36980 270 aa10.77□□□□□ -0.68
USP40-208ENST00000450966 HERVK_113P63121 156 aa10.77□□□□□ -0.68
USP40-208ENST00000450966 C21orf62Q9NYP8 219 aa10.77□□□□□ -0.68
USP40-208ENST00000450966 LINC00527Q9UJ94 153 aa10.77□□□□□ -0.68
USP40-208ENST00000450966 SVILO95425 2214 aa10.77□□□□□ -0.68
USP40-208ENST00000450966 IGKV3D-20A0A0C4DH25 116 aa10.77□□□□□ -0.69
USP40-208ENST00000450966 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.77□□□□□ -0.69
USP40-208ENST00000450966 A0A087WX48 190 aa10.77□□□□□ -0.69
USP40-208ENST00000450966 PAX9P55771 341 aa10.77□□□□□ -0.69
USP40-208ENST00000450966 PLA2G2CQ5R387 149 aa10.77□□□□□ -0.69
USP40-208ENST00000450966 REPIN1Q9BWE0 567 aaKnown RBP10.77□□□□□ -0.69
USP40-208ENST00000450966 FLVCR1-AS1Q8TAF5 88 aa10.77□□□□□ -0.69
USP40-208ENST00000450966 RNF166Q96A37 237 aaPredicted RBP10.77□□□□□ -0.69
USP40-208ENST00000450966 DKK2Q9UBU2 259 aa10.77□□□□□ -0.69
USP40-208ENST00000450966 GNLYP22749 145 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 FOXG1P55316 489 aaPredicted RBP10.76□□□□□ -0.69
USP40-208ENST00000450966 TRBV6-6A0A0A6YYG2 114 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 FAM240AA0A1B0GVK7 77 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 IGHG2P01859 326 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 LINC01620Q4KN68 170 aa10.76□□□□□ -0.69
USP40-208ENST00000450966 LY6G5BQ8NDX9 201 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms