RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	PMCHL1	Q16048	86 aa		13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	LCN12	Q6JVE5	192 aa		13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	DTX2	Q86UW9	622 aa		13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	BCL6B	Q8N143	479 aa	Predicted RBP	13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	NDFIP1	Q9BT67	221 aa		13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	FAM120AOS	Q5T036	256 aa		13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	S100A7A	Q86SG5	101 aa		13.29	□□□□□ -0.28
TOM1-210	ENST00000449058	PDE6H	Q13956	83 aa		13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	CHCHD1	Q96BP2	118 aa	Known RBP	13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	SPTA1	P02549	2419 aa		13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	CHEK1	O14757	476 aa		13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	MINOS1	Q5TGZ0	78 aa		13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	UQCR10	Q9UDW1	63 aa		13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	MINOS1-NBL1	R4GNA1	71 aa		13.28	□□□□□ -0.28
TOM1-210	ENST00000449058	SH2D7	A6NKC9	451 aa	Predicted RBP	13.27	□□□□□ -0.29
TOM1-210	ENST00000449058	RPLP1	P05386	114 aa	Known RBP	13.27	□□□□□ -0.29
TOM1-210	ENST00000449058	ZFP36	P26651	326 aa	Known RBP	13.27	□□□□□ -0.29
TOM1-210	ENST00000449058	CRIP1	P50238	77 aa		13.27	□□□□□ -0.29
TOM1-210	ENST00000449058	GATD1	Q8NB37	220 aa		13.27	□□□□□ -0.29
TOM1-210	ENST00000449058	C21orf62	Q9NYP8	219 aa		13.27	□□□□□ -0.29
TOM1-210	ENST00000449058	NCBP2L	A6PVI3	153 aa	Known RBP	13.26	□□□□□ -0.29
TOM1-210	ENST00000449058		M0QZ24	198 aa		13.26	□□□□□ -0.29
TOM1-210	ENST00000449058		M0R3E3	92 aa		13.26	□□□□□ -0.29
TOM1-210	ENST00000449058	ATOH7	Q8N100	152 aa		13.26	□□□□□ -0.29
TOM1-210	ENST00000449058	KLHDC1	Q8N7A1	406 aa		13.26	□□□□□ -0.29
TOM1-210	ENST00000449058		A0A1B0GUT8	65 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	NDUFB8	O95169	186 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058		Q56UQ5	140 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	ASCL2	Q99929	193 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	EGR2	P11161	476 aa	Predicted RBP	13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	SIRPD	Q9H106	197 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	CLEC5A	Q9NY25	188 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	THYN1	Q9P016	225 aa		13.25	□□□□□ -0.29
TOM1-210	ENST00000449058	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	IGHV1-24	A0A0C4DH33	117 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058		A0A1W2PPR1	153 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	MAJIN	Q3KP22	176 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	DMRTA1	Q5VZB9	504 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	SPATA12	Q7Z6I5	190 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	TMEM70	Q9BUB7	260 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	AAMDC	Q9H7C9	122 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	C1RL	Q9NZP8	487 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	IGF2R	P11717	2491 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	TRAV9-2	A0A087WT02	112 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	CRX	O43186	299 aa	Predicted RBP	13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	ARMS2	P0C7Q2	107 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	LINC00614	P0C842	121 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	RIG	Q13278	110 aa		13.24	□□□□□ -0.29
TOM1-210	ENST00000449058	SERTM2	A0A1B0GWG4	89 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	C20orf202	A1L168	122 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	TMEM11	P17152	192 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	RELN	P78509	3460 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	IGHV7-81	A0A0B4J1V7	117 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058		A0A1B0GW15	77 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	CTSG	P08311	255 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	PRB4	P10163	310 aa	Predicted RBP	13.23	□□□□□ -0.29
TOM1-210	ENST00000449058		Q6AWC8	147 aa		13.23	□□□□□ -0.29
TOM1-210	ENST00000449058	PSG9	Q00887	426 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058		Q6ZN92	141 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058	C8orf49	Q96NF6	230 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058	TXN2	Q99757	166 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058	IGHV3-23	P01764	117 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058	CYB5R2	Q6BCY4	276 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058		Q8N9W7	124 aa		13.22	□□□□□ -0.29
TOM1-210	ENST00000449058	OR2T8	A6NH00	312 aa		13.21	□□□□□ -0.29
TOM1-210	ENST00000449058	NDUFS7	O75251	213 aa		13.21	□□□□□ -0.29
TOM1-210	ENST00000449058	RPL7	P18124	248 aa	Known RBP	13.21	□□□□□ -0.29
TOM1-210	ENST00000449058	CSN1S1	P47710	185 aa		13.21	□□□□□ -0.29
TOM1-210	ENST00000449058	COX8C	Q7Z4L0	72 aa		13.21	□□□□□ -0.29
TOM1-210	ENST00000449058	LPAR2	Q9HBW0	351 aa		13.21	□□□□□ -0.29
TOM1-210	ENST00000449058	CT45A10	P0DMU9	189 aa		13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	ZNF25	P17030	456 aa	Predicted RBP	13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	G0S2	P27469	103 aa		13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	HNRNPA3	P51991	378 aa	Known RBP	13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	BATF	Q16520	125 aa		13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	LINC00173	Q6ZV60	143 aa		13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	AJUBA	Q96IF1	538 aa		13.21	□□□□□ -0.3
TOM1-210	ENST00000449058	LEPROTL1	O95214	131 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	OR5AL1	P0C617	328 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	SVIP	Q8NHG7	77 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	SYS1-DBNDD2	H3BUS1	97 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	SCGB2A1	O75556	95 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	IGLL1	P15814	213 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	COL5A1-AS1	Q5SY13	56 aa		13.2	□□□□□ -0.3
TOM1-210	ENST00000449058	ATRX	P46100	2492 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	NBAS	A2RRP1	2371 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	IGHV2-70D	A0A0C4DH43	119 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	FAM106CP	P0CH98	169 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	TSPO	P30536	169 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	KLK9	Q2XQG4	91 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	ZNF493	Q6ZR52	646 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	RABAC1	Q9UI14	185 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	KLK9	Q9UKQ9	250 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	LAMTOR2	Q9Y2Q5	125 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	MRPS16	Q9Y3D3	137 aa	Known RBP	13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	SMAD5-AS1	Q9Y6J3	95 aa		13.19	□□□□□ -0.3
TOM1-210	ENST00000449058	UBE2E1	P51965	193 aa		13.18	□□□□□ -0.3
TOM1-210	ENST00000449058	ZNF138	P52744	262 aa		13.18	□□□□□ -0.3
TOM1-210	ENST00000449058	TMEM208	Q9BTX3	173 aa		13.18	□□□□□ -0.3
TOM1-210	ENST00000449058	COTL1	Q14019	142 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms