RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF714Q96N38 554 aa8.9□□□□□ -0.98
CUX1-204ENST00000393824 GPR82Q96P67 336 aa8.9□□□□□ -0.98
CUX1-204ENST00000393824 CELSR1Q9NYQ6 3014 aa8.9□□□□□ -0.98
CUX1-204ENST00000393824 APCP25054 2843 aa8.9□□□□□ -0.99
CUX1-204ENST00000393824 C19orf71A6NCJ1 209 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 SRRM5B3KS81 715 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 COL8A1P27658 744 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 PRCDQ00LT1 54 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 EDDM3AQ14507 147 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 LTC4SQ16873 150 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 RBPMS2Q6ZRY4 209 aaKnown RBP8.89□□□□□ -0.99
CUX1-204ENST00000393824 OR9G4Q8NGQ1 327 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 ITLN1Q8WWA0 313 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 PAXXQ9BUH6 204 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 TMUB1Q9BVT8 246 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 GEMIN7Q9H840 131 aaKnown RBP8.89□□□□□ -0.99
CUX1-204ENST00000393824 ZNF492Q9P255 531 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 SPCS1Q9Y6A9 102 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 GAGE12HA6NDE8 117 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 LY6HO94772 140 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 PLA2G2AP14555 144 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 TMEM30BQ3MIR4 351 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 CCDC144NLQ6NUI1 221 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 OR1L8Q8NGR8 309 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 CACNG8Q8WXS5 425 aa8.89□□□□□ -0.99
CUX1-204ENST00000393824 IGKV1D-17A0A075B6S4 117 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.88□□□□□ -0.99
CUX1-204ENST00000393824 H0Y8G0 127 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 TSPAN13O95857 204 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 PYYP10082 97 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 ZNF138P52744 262 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 CD69Q07108 199 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 PRR31Q5SQ13 230 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 ADAMTSL5Q6ZMM2 481 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 LINC00322Q6ZN03 302 aaPredicted RBP8.88□□□□□ -0.99
CUX1-204ENST00000393824 C1orf229Q6ZS94 237 aaPredicted RBP8.88□□□□□ -0.99
CUX1-204ENST00000393824 MOGAT3Q86VF5 341 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 OR4X2Q8NGF9 303 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 CALYQ9NYX4 217 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 EPDR1Q9UM22 224 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 MED13LQ71F56 2210 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 HAX1O00165 279 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 UPK2O00526 184 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 CHEK1O14757 476 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 CSN1S1P47710 185 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 FXYD5Q96DB9 178 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 PGLYRP4Q96LB8 373 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 HINT2Q9BX68 163 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 AP5S1Q9NUS5 200 aa8.88□□□□□ -0.99
CUX1-204ENST00000393824 ZNF469Q96JG9 3925 aaPredicted RBP8.88□□□□□ -0.99
CUX1-204ENST00000393824 C17orf100A8MU93 164 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 J3KRW8 73 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 P01737 135 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 MYOD1P15172 320 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 MLANAQ16655 118 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 SELENOKQ9Y6D0 94 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 ITPR2Q14571 2701 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 OR11H12B2RN74 326 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 NPIPB6E9PJ23 425 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 INS-IGF2F8WCM5 200 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 LYNX1G3V0Z9 82 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 SMAD7O15105 426 aaKnown RBP8.87□□□□□ -0.99
CUX1-204ENST00000393824 FSTL3O95633 263 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 NCR2O95944 276 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 APOHP02749 345 aaPredicted RBP8.87□□□□□ -0.99
CUX1-204ENST00000393824 LYNX1P0DP58 116 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 RNASE2P10153 161 aaKnown RBP8.87□□□□□ -0.99
CUX1-204ENST00000393824 FABP2P12104 132 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 TNFAIP6P98066 277 aaPredicted RBP8.87□□□□□ -0.99
CUX1-204ENST00000393824 CT45A1Q5HYN5 189 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 ZNF788Q6ZQV5 615 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 OR11H1Q8NG94 326 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 OR1L4Q8NGR5 311 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 OR11H2Q8NH07 326 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 CT45A3Q8NHU0 189 aa8.87□□□□□ -0.99
CUX1-204ENST00000393824 TSSC4Q9Y5U2 329 aaPredicted RBP8.87□□□□□ -0.99
CUX1-204ENST00000393824 IGHV3OR15-7A0A075B7D8 119 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 TEX48A0A1B0GUV7 120 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 MOSP00540 346 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 ZNF137PP52743 207 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 RPL24P83731 157 aaKnown RBP8.86□□□□□ -0.99
CUX1-204ENST00000393824 DUX4L9Q6RFH8 374 aaPredicted RBP8.86□□□□□ -0.99
CUX1-204ENST00000393824 PERPQ96FX8 193 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 SPATA25Q9BR10 227 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 NAA38Q9BRA0 125 aaKnown RBP8.86□□□□□ -0.99
CUX1-204ENST00000393824 ZFHX3Q15911 3703 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 KBTBD11-OT1A0A1B0GTJ5 212 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 ZNF207O43670 478 aaKnown RBP8.86□□□□□ -0.99
CUX1-204ENST00000393824 COX7A2P2O60397 106 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 NDUFS7O75251 213 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 LTAP01374 205 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 SAA2P0DJI9 122 aaPredicted RBP8.86□□□□□ -0.99
CUX1-204ENST00000393824 GNG5P63218 68 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 C17orf58Q2M2W7 97 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 LGALS9BQ3B8N2 356 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 C10orf113Q5VZT2 155 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 LGALS9CQ6DKI2 356 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 HIST2H2BCQ6DN03 193 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 PATE2Q6UY27 113 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 PIP4P2Q8N4L2 257 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 474.4 ms