RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ASH1LQ9NR48 2969 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 NIT1Q86X76 327 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 Q8N976 141 aa16.3■□□□□ 0.2
CCDC88B-203ENST00000359902 ITPR1Q14643 2758 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 PRB4P10163 310 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 GNLYP22749 145 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 OR4B1Q8NGF8 309 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 ZC2HC1AQ96GY0 325 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 C1RLQ9NZP8 487 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 ZFP30Q9Y2G7 519 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 OR2T8A6NH00 312 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 DIRC3C9JPN6 131 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 CTSGP08311 255 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 PSG3Q16557 428 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 PRR31Q5SQ13 230 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 PSG8Q9UQ74 426 aa16.29■□□□□ 0.2
CCDC88B-203ENST00000359902 K7EQM0 130 aa16.28■□□□□ 0.2
CCDC88B-203ENST00000359902 M0R3E3 92 aa16.28■□□□□ 0.2
CCDC88B-203ENST00000359902 PDE6HQ13956 83 aa16.28■□□□□ 0.2
CCDC88B-203ENST00000359902 ASCL2Q99929 193 aa16.28■□□□□ 0.2
CCDC88B-203ENST00000359902 SAA4P35542 130 aa16.28■□□□□ 0.2
CCDC88B-203ENST00000359902 PPP1R14DQ9NXH3 145 aa16.28■□□□□ 0.2
CCDC88B-203ENST00000359902 M0R143 59 aa16.27■□□□□ 0.2
CCDC88B-203ENST00000359902 C20orf144Q9BQM9 153 aa16.27■□□□□ 0.19
CCDC88B-203ENST00000359902 SNHG12Q9BXW3 62 aa16.27■□□□□ 0.19
CCDC88B-203ENST00000359902 OVOL3O00110 214 aa16.26■□□□□ 0.19
CCDC88B-203ENST00000359902 NTF3P20783 257 aa16.26■□□□□ 0.19
CCDC88B-203ENST00000359902 FOXA3P55318 350 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-203ENST00000359902 RAB4AP20338 218 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 TXN2Q99757 166 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 APOHP02749 345 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 C3orf79P0CE67 100 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 CRIP1P50238 77 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 VAMP8Q9BV40 100 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 AAMDCQ9H7C9 122 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 LPAR2Q9HBW0 351 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 PAM16Q9Y3D7 125 aa16.25■□□□□ 0.19
CCDC88B-203ENST00000359902 TMUB1Q9BVT8 246 aa16.24■□□□□ 0.19
CCDC88B-203ENST00000359902 HAX1O00165 279 aa16.24■□□□□ 0.19
CCDC88B-203ENST00000359902 HSBP1O75506 76 aa16.24■□□□□ 0.19
CCDC88B-203ENST00000359902 G0S2P27469 103 aa16.24■□□□□ 0.19
CCDC88B-203ENST00000359902 PIP4P2Q8N4L2 257 aa16.24■□□□□ 0.19
CCDC88B-203ENST00000359902 FAM110DQ8TAY7 271 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-203ENST00000359902 UNQ5815/PRO19632Q6UWF5 114 aa16.23■□□□□ 0.19
CCDC88B-203ENST00000359902 SCGB2A1O75556 95 aa16.23■□□□□ 0.19
CCDC88B-203ENST00000359902 RPL7P18124 248 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-203ENST00000359902 SVEP1Q4LDE5 3571 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 SH2D7A6NKC9 451 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 ATP6V0E1O15342 81 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 PSG9Q00887 426 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 AKAP6Q13023 2319 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 KLK9Q2XQG4 91 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 RNASEKQ6P5S7 137 aaKnown RBP16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 BORCS7Q96B45 105 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 URB1-AS1Q96HZ7 61 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 RABAC1Q9UI14 185 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 KLK9Q9UKQ9 250 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 NPFFO15130 113 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 ECSCRQ19T08 205 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 C15orf32Q32M92 178 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 C8orf49Q96NF6 230 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 SMAD5-AS1Q9Y6J3 95 aa16.22■□□□□ 0.19
CCDC88B-203ENST00000359902 CENPVL3A0A0U1RRI6 287 aa16.21■□□□□ 0.19
CCDC88B-203ENST00000359902 IGHV4-39P01824 125 aa16.21■□□□□ 0.19
CCDC88B-203ENST00000359902 ZNF502Q8TBZ5 544 aa16.21■□□□□ 0.19
CCDC88B-203ENST00000359902 CSN1S1P47710 185 aa16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 RELQ04864 619 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 MIEN1Q9BRT3 115 aa16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 LOC102724200A0A096LPH7 203 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 IGHV3-35A0A0C4DH35 117 aa16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 M0QZK8 103 aa16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 M0R2Z0 102 aa16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 CHEK1O14757 476 aa16.2■□□□□ 0.18
CCDC88B-203ENST00000359902 A0A1B0GUT8 65 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 SERTM2A0A1B0GWG4 89 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 LINC01548A6NM66 108 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 ZNF25P17030 456 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 GPR183P32249 361 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 RHOGP84095 191 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 NDFIP1Q9BT67 221 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 IGHV3OR16-8A0A075B7F1 116 aa16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 ZNF705AQ6ZN79 300 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-203ENST00000359902 FAM181BA6NEQ2 426 aa16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 ARMS2P0C7Q2 107 aa16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 ARL6IP6Q8N6S5 226 aa16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 IGKV2-40A0A087WW87 121 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 G3V318 75 aa16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 IGKV2D-40P01614 121 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 CLEC3BP05452 202 aa16.18■□□□□ 0.18
CCDC88B-203ENST00000359902 M0QZ24 198 aa16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 CT45A10P0DMU9 189 aa16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 CTRLP40313 264 aa16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 FAM162BQ5T6X4 162 aa16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 EBLN2Q6P2I7 272 aa16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 MRPL52Q86TS9 123 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 IGHG4P01861 327 aa16.17■□□□□ 0.18
CCDC88B-203ENST00000359902 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 PAX8Q06710 450 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 RIGQ13278 110 aa16.16■□□□□ 0.18
CCDC88B-203ENST00000359902 ZFAND3Q9H8U3 227 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms