RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 TRIOBPQ9H2D6 2365 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 NDPQ00604 133 aa12.05□□□□□ -0.48
CHD4-201ENST00000357008 IGLC2P0DOY2 106 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 IGLC3P0DOY3 106 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 IGHV3-73A0A0B4J1V6 119 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 PAX9P55771 341 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 TMEM219Q86XT9 240 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 TIMM21Q9BVV7 248 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 YPEL3P61236 119 aaPredicted RBP12.04□□□□□ -0.48
CHD4-201ENST00000357008 IGFL4Q6B9Z1 124 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 EP300Q09472 2414 aaPredicted RBP12.04□□□□□ -0.48
CHD4-201ENST00000357008 EFNA4P52798 201 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 TMEM75Q8N9X5 138 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 MDS2Q8NDY4 140 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 LY6G5BQ8NDX9 201 aa12.04□□□□□ -0.48
CHD4-201ENST00000357008 DEFB104AQ8WTQ1 72 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 USMG5Q96IX5 58 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 DOPEY2Q9Y3R5 2298 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 C9JAW5 83 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 FCN3O75636 299 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 TRAV8-3A0A0A6YYJ7 113 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 CD59P13987 128 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 ABCA1O95477 2261 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 LEPROTO15243 131 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 DTX1Q86Y01 620 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 SPANXA1Q9NS26 97 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 TMEM14BQ9NUH8 114 aa12.03□□□□□ -0.48
CHD4-201ENST00000357008 A0A087WX48 190 aa12.02□□□□□ -0.48
CHD4-201ENST00000357008 E9PQ18 207 aa12.02□□□□□ -0.48
CHD4-201ENST00000357008 C1orf147Q96MC9 270 aaPredicted RBP12.02□□□□□ -0.48
CHD4-201ENST00000357008 HS3ST6Q96QI5 342 aa12.02□□□□□ -0.48
CHD4-201ENST00000357008 A0A1W2PPI3 338 aa12.02□□□□□ -0.49
CHD4-201ENST00000357008 FAM104BQ5XKR9 115 aa12.02□□□□□ -0.49
CHD4-201ENST00000357008 FAM223BA6NKX1 122 aa12.02□□□□□ -0.49
CHD4-201ENST00000357008 FAM223AQ8IWN6 122 aa12.02□□□□□ -0.49
CHD4-201ENST00000357008 LAMTOR3Q9UHA4 124 aa12.02□□□□□ -0.49
CHD4-201ENST00000357008 MBD3L4A6NDZ8 208 aaPredicted RBP12.01□□□□□ -0.49
CHD4-201ENST00000357008 MBD3L3A6NE82 208 aaPredicted RBP12.01□□□□□ -0.49
CHD4-201ENST00000357008 MBD3L5A6NJ08 208 aaPredicted RBP12.01□□□□□ -0.49
CHD4-201ENST00000357008 PRSS46E5RG02 174 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 MBD3L2Q8NHZ7 208 aaPredicted RBP12.01□□□□□ -0.49
CHD4-201ENST00000357008 ZNF726P1Q15940 193 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 Q6ZWC4 215 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 NEGR1Q7Z3B1 354 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 CYYR1Q96J86 154 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 TRGV1A0A0A0MS02 117 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 LMO1P25800 156 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 KIAA2026Q5HYC2 2103 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 C9orf118A6NHY6 69 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 FAM231DQ6ZW35 169 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 DNAJC30Q96LL9 226 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 ERCC8Q13216 396 aa12.01□□□□□ -0.49
CHD4-201ENST00000357008 TMEM213A2RRL7 107 aa12□□□□□ -0.49
CHD4-201ENST00000357008 C3orf36Q3SXR2 165 aa12□□□□□ -0.49
CHD4-201ENST00000357008 C1orf159Q96HA4 380 aa12□□□□□ -0.49
CHD4-201ENST00000357008 SPXQ9BT56 116 aa12□□□□□ -0.49
CHD4-201ENST00000357008 CFHR2P36980 270 aa12□□□□□ -0.49
CHD4-201ENST00000357008 C1orf122Q6ZSJ8 110 aa12□□□□□ -0.49
CHD4-201ENST00000357008 DSCR9P59020 149 aa12□□□□□ -0.49
CHD4-201ENST00000357008 TRBV20-1A0A075B6N2 111 aa12□□□□□ -0.49
CHD4-201ENST00000357008 C6orf226Q5I0X4 101 aa12□□□□□ -0.49
CHD4-201ENST00000357008 PRIMA1Q86XR5 153 aa12□□□□□ -0.49
CHD4-201ENST00000357008 EDA2RQ9HAV5 297 aa12□□□□□ -0.49
CHD4-201ENST00000357008 V9GYV3 84 aa12□□□□□ -0.49
CHD4-201ENST00000357008 RHPN1-AS1Q9BWJ2 59 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 A0A087WWL8 130 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 KLF12Q9Y4X4 402 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 CNOT1A5YKK6 2376 aaKnown RBP11.99□□□□□ -0.49
CHD4-201ENST00000357008 IGHG3P01860 377 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 H3BUX3 64 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 MMP23AO75900 390 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 Q8N8P6 123 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 NDUFA4L2Q9NRX3 87 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 ETV2O00321 342 aaPredicted RBP11.99□□□□□ -0.49
CHD4-201ENST00000357008 LYPD2Q6UXB3 125 aa11.99□□□□□ -0.49
CHD4-201ENST00000357008 ZNF48Q96MX3 618 aaPredicted RBP11.98□□□□□ -0.49
CHD4-201ENST00000357008 NDUFB8O95169 186 aa11.98□□□□□ -0.49
CHD4-201ENST00000357008 TRPT1Q86TN4 253 aaKnown RBP11.98□□□□□ -0.49
CHD4-201ENST00000357008 VGLL1Q99990 258 aa11.98□□□□□ -0.49
CHD4-201ENST00000357008 SMIM27A0A1W2PRY6 76 aa11.98□□□□□ -0.49
CHD4-201ENST00000357008 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.98□□□□□ -0.49
CHD4-201ENST00000357008 NPSP0C0P6 89 aa11.98□□□□□ -0.49
CHD4-201ENST00000357008 POLEQ07864 2286 aa11.98□□□□□ -0.49
CHD4-201ENST00000357008 GAGE1Q13065 139 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 COX8AP10176 69 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 SLAQ13239 276 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 C2orf66Q6UXQ4 117 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 SPACA3Q8IXA5 215 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 TRBV19A0A075B6N1 114 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 IGLL1P15814 213 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 GAGE2AQ6NT46 116 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 TMEM141Q96I45 108 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 TRAV13-1A0A0B4J241 112 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 A0A0G2JNJ9 132 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 INSP01308 110 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 Q9UFV3 132 aa11.97□□□□□ -0.49
CHD4-201ENST00000357008 IGKV1-39P01597 117 aa11.96□□□□□ -0.49
CHD4-201ENST00000357008 IGKV1D-39P04432 117 aa11.96□□□□□ -0.49
CHD4-201ENST00000357008 LGALS9BQ3B8N2 356 aa11.96□□□□□ -0.49
CHD4-201ENST00000357008 LGALS9CQ6DKI2 356 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms