RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 PYYP10082 97 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 USF1P22415 310 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 PPT1P50897 306 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 UCNP55089 124 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 ATP5IP56385 69 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 TLE4Q04727 773 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 AVPI1Q5T686 147 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 FAM122CQ6P4D5 195 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 H2BFWTQ7Z2G1 175 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 LYG1Q8N1E2 194 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PRR26Q8N8Z3 221 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 OR5T1Q8NG75 326 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PINX1Q96BK5 328 aaKnown RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 ADTRPQ96IZ2 230 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 CITED2Q99967 270 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 CHRDL1Q9BU40 450 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 CNFNQ9BYD5 112 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 MANBALQ9NQG1 85 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 WASHC3Q9Y3C0 194 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SORL1Q92673 2214 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 IGLV2-18A0A075B6J9 118 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 hADV38S2A0JD32 116 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 A6NDX4 124 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 ZNF98A6NK75 572 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 CEBPZOSA8MTT3 80 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 TOMM40O96008 361 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 TRGC2P03986 189 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 REG1AP05451 166 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 TRGC1P0CF51 173 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PVALBP20472 110 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 NPY1RP25929 384 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PSMB3P49720 205 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 ZNF80P51504 273 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 RPL23AP62750 156 aaKnown RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 RPL8P62917 257 aaKnown RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 ZNF415Q09FC8 603 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 OR5I1Q13606 314 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PRR9Q5T870 116 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 WDR73Q6P4I2 378 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SLC16A13Q7RTY0 426 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PPP1R27Q86WC6 154 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 NIT1Q86X76 327 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 RNASE8Q8TDE3 154 aaKnown RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 NRGNQ92686 78 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PACRGQ96M98 296 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 RCHY1Q96PM5 261 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 UHRF2Q96PU4 802 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 CIB3Q96Q77 187 aaPredicted RBP1.74□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BLQ99880 126 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SRD5A3Q9H8P0 318 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 SLC35D1Q9NTN3 355 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 PRNDQ9UKY0 176 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 TNFRSF18Q9Y5U5 241 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 AGRNO00468 2067 aa1.74□□□□□ -2.13
VPS54-202ENST00000354504 IGHV4-30-2A0A087WSY4 118 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 A0A1W2PRE2 83 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 NUDT3O95989 172 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 IFNA10P01566 189 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 AMBPP02760 352 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 PRB1P04280 392 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 IFNA4P05014 189 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 IGHV4-38-2P0DP08 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GZMBP10144 247 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 PRB4P10163 310 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 CD24P25063 80 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 RPL35P42766 123 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 CDX1P47902 265 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 UBE2E1P51965 193 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SNRPEP62304 92 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 TMEM183BQ1AE95 376 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TDRG1Q3Y452 100 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TCTEX1D4Q5JR98 221 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 LCN15Q6UWW0 184 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 ZFP82Q8N141 532 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 LHX4Q969G2 390 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 S1PR3Q99500 378 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAL3ST2Q9H3Q3 398 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 NAT8Q9UHE5 227 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 FLNAP21333 2647 aaKnown RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 BORCS7-ASMTA0A0B4J1R7 106 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 IGHV7-4-1A0A0J9YVY3 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 KRTAP29-1A8MX34 341 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 M0R036 132 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 ISLRO14498 428 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CRXO43186 299 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 OR2J3O76001 311 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAGE7O76087 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAS8-AS1O95177 125 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 TRBV12-3P01733 135 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAGE12FP0CL80 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAGE12GP0CL81 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAGE12IP0CL82 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 COX7A1P24310 79 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 LGALS7P47929 136 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CDC34P49427 236 aaPredicted RBP1.73□□□□□ -2.13
VPS54-202ENST00000354504 CX3CL1P78423 397 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAGE1Q13065 139 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 GAGE4Q13068 117 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 CATR1Q13166 79 aa1.73□□□□□ -2.13
VPS54-202ENST00000354504 SLAQ13239 276 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms