RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ZNF785A8K8V0 405 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 PRB2P02812 416 aaPredicted RBP7.05□□□□□ -1.28
USP4-202ENST00000351842 ARL14EPLP0DKL9 152 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 CST9LP1Q5W188 147 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 CFAP161Q6P656 301 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 RNF2Q99496 336 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 C16orf95Q9H693 158 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 GNG13Q9P2W3 67 aa7.05□□□□□ -1.28
USP4-202ENST00000351842 NPSP0C0P6 89 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 S100A2P29034 98 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 RANP62826 216 aaKnown RBP7.04□□□□□ -1.28
USP4-202ENST00000351842 ACOT6Q3I5F7 207 aaPredicted RBP7.04□□□□□ -1.28
USP4-202ENST00000351842 RHPN1-AS1Q9BWJ2 59 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.04□□□□□ -1.28
USP4-202ENST00000351842 MAP1LC3B2A6NCE7 125 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 IGKV3-20P01619 116 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 CCL20P78556 96 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 TRGV9Q99603 122 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 SLC25A39Q9BZJ4 359 aaPredicted RBP7.04□□□□□ -1.28
USP4-202ENST00000351842 MAP1LC3BQ9GZQ8 125 aa7.04□□□□□ -1.28
USP4-202ENST00000351842 DLEU1O43261 78 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 CRIP2P52943 208 aaPredicted RBP7.03□□□□□ -1.28
USP4-202ENST00000351842 UBE2L3P68036 154 aaKnown RBP7.03□□□□□ -1.28
USP4-202ENST00000351842 C4orf3Q8WVX3 66 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 TRAV30A0A087WSZ9 112 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 J3KRW8 73 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 ATP5IP56385 69 aaPredicted RBP7.03□□□□□ -1.28
USP4-202ENST00000351842 ZNF726P1Q15940 193 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 OXLD1Q5BKU9 147 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 ZNF506Q5JVG8 444 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 TOMM40O96008 361 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 ZNF705DP0CH99 300 aaPredicted RBP7.03□□□□□ -1.28
USP4-202ENST00000351842 ZNF705BP0CI00 300 aaPredicted RBP7.03□□□□□ -1.28
USP4-202ENST00000351842 HLA-DMBP28068 263 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 SELENOTP62341 195 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 RNF182Q8N6D2 247 aa7.03□□□□□ -1.28
USP4-202ENST00000351842 DAZ1Q9NQZ3 744 aaKnown RBP7.03□□□□□ -1.28
USP4-202ENST00000351842 H3BUA1 57 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 OVOL1O14753 267 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 EREGO14944 169 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 MPDU1O75352 247 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 SRP19P09132 144 aaKnown RBP7.02□□□□□ -1.29
USP4-202ENST00000351842 LINC00614P0C842 121 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 CD33P20138 364 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 RAB5AP20339 215 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 RPL29P47914 159 aaKnown RBP7.02□□□□□ -1.29
USP4-202ENST00000351842 PRR20EP86478 221 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 PRR20CP86479 221 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 PRR20DP86480 221 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 PRR20BP86481 221 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 PRR20AP86496 221 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 VWC2Q2TAL6 325 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 TMEM41BQ5BJD5 291 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 DMRTA1Q5VZB9 504 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 THAP8Q8NA92 274 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 TMEM208Q9BTX3 173 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 ACTR3CQ9C0K3 210 aaPredicted RBP7.02□□□□□ -1.29
USP4-202ENST00000351842 EIF5A2Q9GZV4 153 aaKnown RBP7.02□□□□□ -1.29
USP4-202ENST00000351842 GAR1Q9NY12 217 aaKnown RBP7.02□□□□□ -1.29
USP4-202ENST00000351842 SEC14L6B5MCN3 397 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 HSBP1L1C9JCN9 74 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 IGLL1P15814 213 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 RHOBP62745 196 aa7.02□□□□□ -1.29
USP4-202ENST00000351842 TMEM213A2RRL7 107 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 IZUMO1RA6ND01 250 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 RBFOX3A6NFN3 312 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 ADARB2-AS1A8MUL3 147 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 M0QZ24 198 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 PVRIGQ6DKI7 326 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 EXOC3-AS1Q8N2X6 119 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 GLMPQ8WWB7 406 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 A6NJY4 79 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 ZNF688P0C7X2 276 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 CBLN1P23435 193 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 RBPMS2Q6ZRY4 209 aaKnown RBP7.01□□□□□ -1.29
USP4-202ENST00000351842 TCF24Q7RTU0 167 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 OR10D4PQ8NGN7 298 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 OR9G4Q8NGQ1 327 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 MBD3L1Q8WWY6 194 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 TMEM190Q8WZ59 177 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 PSMG3Q9BT73 122 aaPredicted RBP7.01□□□□□ -1.29
USP4-202ENST00000351842 ZFAND3Q9H8U3 227 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 A0A1B0GUS0 222 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 TMEM89A2RUT3 159 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 C2orf70A6NJV1 201 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 M0R3E3 92 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 ICAM4Q14773 271 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 OR1L4Q8NGR5 311 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 PAXXQ9BUH6 204 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 RPS10P5Q9NQ39 176 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 TMEM242Q9NWH2 141 aa7.01□□□□□ -1.29
USP4-202ENST00000351842 H3BQ15 152 aa7□□□□□ -1.29
USP4-202ENST00000351842 YPEL3P61236 119 aaPredicted RBP7□□□□□ -1.29
USP4-202ENST00000351842 RBX1P62877 108 aa7□□□□□ -1.29
USP4-202ENST00000351842 KHDC3LQ587J8 217 aa7□□□□□ -1.29
USP4-202ENST00000351842 KCNIP2Q9NS61 270 aa7□□□□□ -1.29
USP4-202ENST00000351842 FUT9Q9Y231 359 aa7□□□□□ -1.29
USP4-202ENST00000351842 IFITM10A6NMD0 228 aa7□□□□□ -1.29
USP4-202ENST00000351842 ZNF705FA8MVS1 300 aaPredicted RBP7□□□□□ -1.29
USP4-202ENST00000351842 NDUFA4O00483 81 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms