RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 F8W735 103 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-201ENST00000341247 IGLV2-11P01706 119 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 HLA-DMBP28068 263 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 DNLZQ5SXM8 178 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 SIGLEC15Q6ZMC9 328 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 ZNF705AQ6ZN79 300 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-201ENST00000341247 ZC2HC1AQ96GY0 325 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 KCNS1Q96KK3 526 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 C8orf49Q96NF6 230 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 IGKV2-40A0A087WW87 121 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-201ENST00000341247 A8MWL6 223 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 ZNF207O43670 478 aaKnown RBP8.1□□□□□ -1.11
LIMA1-201ENST00000341247 IGKV2D-40P01614 121 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-201ENST00000341247 FAM106CPP0CH98 169 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 PIP4P2Q8N4L2 257 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 Q8N9W7 124 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 PRORYQ9H606 182 aa8.1□□□□□ -1.11
LIMA1-201ENST00000341247 SOX21Q9Y651 276 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-201ENST00000341247 ATP6V0E1O15342 81 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 EGR2P11161 476 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-201ENST00000341247 ZNF414Q96IQ9 312 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 DIRC3C9JPN6 131 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 IGLC2P0DOY2 106 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 LMO4P61968 165 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 C15orf32Q32M92 178 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 LCN12Q6JVE5 192 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 PSG8Q9UQ74 426 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 EREGO14944 169 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 ZNF324O75467 553 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-201ENST00000341247 HSBP1O75506 76 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 ZNF138P52744 262 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 HBBP68871 147 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 Q8TAT8 98 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 SRSF8Q9BRL6 282 aaKnown RBP8.09□□□□□ -1.11
LIMA1-201ENST00000341247 TMEM14CQ9P0S9 112 aa8.09□□□□□ -1.11
LIMA1-201ENST00000341247 NPIPB5A8MRT5 1133 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 IGHV4-39P01824 125 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 CSN3P07498 182 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 PAX1P15863 534 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 PAX2Q02962 417 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 OR10J3Q5JRS4 329 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 THYN1Q9P016 225 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 USP9YO00507 2555 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-201ENST00000341247 C19orf71A6NCJ1 209 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 CLEC3BP05452 202 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 CTSGP08311 255 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 COX19Q49B96 90 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 MINOS1Q5TGZ0 78 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 TTC9CQ8N5M4 171 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 Q8N6K4 173 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 NDUFAF3Q9BU61 184 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 MINOS1-NBL1R4GNA1 71 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 WI2-2373I1.2A0A1W2PRP0 233 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 ZNF785A8K8V0 405 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 CHEK1O14757 476 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 RHOGP84095 191 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 CLEC19AQ6UXS0 136 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 PRSS22Q9GZN4 317 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 AAMDCQ9H7C9 122 aa8.08□□□□□ -1.12
LIMA1-201ENST00000341247 ZNF462Q96JM2 2506 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 ALKBH7Q9BT30 221 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-201ENST00000341247 VAMP8Q9BV40 100 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 SELENOKQ9Y6D0 94 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 M0R2Z0 102 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 C3orf79P0CE67 100 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 ESDP10768 282 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 UBE2E1P51965 193 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 C1orf194Q5T5A4 169 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 C1orf122Q6ZSJ8 110 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 NIT1Q86X76 327 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 CLEC5AQ9NY25 188 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 TRAV30A0A087WSZ9 112 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 K7EQM0 130 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 MRPS12O15235 138 aaKnown RBP8.07□□□□□ -1.12
LIMA1-201ENST00000341247 ARMS2P0C7Q2 107 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 BATFQ16520 125 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 LY6EQ16553 131 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 RBPMS2Q6ZRY4 209 aaKnown RBP8.07□□□□□ -1.12
LIMA1-201ENST00000341247 NRGNQ92686 78 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 BORCS7Q96B45 105 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 AJUBAQ96IF1 538 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 C1RLQ9NZP8 487 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 DOPEY1Q5JWR5 2465 aa8.07□□□□□ -1.12
LIMA1-201ENST00000341247 NPFFO15130 113 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 CRIP1P50238 77 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 PSG3Q16557 428 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 MAJINQ3KP22 176 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 EPG5Q9HCE0 2579 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 TRAV40A0A0B4J280 105 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 CENPVL3A0A0U1RRI6 287 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 H0Y8G0 127 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 WIPF2Q8TF74 440 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-201ENST00000341247 DOPEY2Q9Y3R5 2298 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 LRRK2Q5S007 2527 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 IGHV4-61A0A0C4DH41 118 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 A0A1B0GXF2 115 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 RABAC1Q9UI14 185 aa8.06□□□□□ -1.12
LIMA1-201ENST00000341247 CSN1S1P47710 185 aa8.05□□□□□ -1.12
LIMA1-201ENST00000341247 RNF182Q8N6D2 247 aa8.05□□□□□ -1.12
LIMA1-201ENST00000341247 ZNF492Q9P255 531 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms