RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 HIST1H2BKO60814 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 DKK1O94907 266 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BJP06899 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BOP23527 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BBP33778 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BDP58876 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BCP62807 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST2H2BEQ16778 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BHQ93079 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BNQ99877 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 HIST1H2BMQ99879 126 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 LAMTOR2Q9Y2Q5 125 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 GGTLC3B5MD39 225 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 CACNA1BQ00975 2339 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 KIAA1671Q9BY89 1806 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 DIDO1Q9BTC0 2240 aaKnown RBP13.96□□□□□ -0.17
SHANK1-201ENST00000293441 SMKR1H3BMG3 65 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 FRMPD3Q5JV73 1810 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 TRAV13-1A0A0B4J241 112 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 ZNF562Q6V9R5 426 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 C6orf226Q5I0X4 101 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 LYPD1Q8N2G4 141 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 PROK2Q9HC23 129 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 CACNA1GO43497 2377 aa13.96□□□□□ -0.17
SHANK1-201ENST00000293441 CXCL1P09341 107 aa13.96□□□□□ -0.18
SHANK1-201ENST00000293441 LINC01551Q86U37 167 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 TMEM190Q8WZ59 177 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 RASL10AQ92737 203 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 LINC01549A6NIU2 74 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 GSN-AS1Q9NRJ2 163 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 CFHR2P36980 270 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 SPINK13Q1W4C9 94 aa13.95□□□□□ -0.18
SHANK1-201ENST00000293441 F5H768 121 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 NDUFB8O95169 186 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 SHANK2-AS3Q9BTD1 123 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 ACACAQ13085 2346 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 KNCNA6PVL3 124 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 Q6ZR03 302 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 CEACAM8P31997 349 aaPredicted RBP13.94□□□□□ -0.18
SHANK1-201ENST00000293441 SS18Q15532 418 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 Q6ZS49 121 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 Q8TCH9 128 aa13.94□□□□□ -0.18
SHANK1-201ENST00000293441 Q6ZRM9 215 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 TMEM238C9JI98 176 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 DAD1P61803 113 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 TRAV1-1A0A0B4J248 108 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 IGHV3-16A0A0C4DH30 117 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 KLK9Q9UKQ9 250 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 ERG28Q9UKR5 140 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 PLXND1Q9Y4D7 1925 aa13.93□□□□□ -0.18
SHANK1-201ENST00000293441 PLXNA4Q9HCM2 1894 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 ORAOV1Q8WV07 137 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 CDK2AP2O75956 126 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 NBL1P41271 181 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 SSBP2P81877 361 aaPredicted RBP13.92□□□□□ -0.18
SHANK1-201ENST00000293441 PLEKHB2Q96CS7 222 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 SMPXQ9UHP9 88 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 TMEM158Q8WZ71 300 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 TSC2P49815 1807 aa13.92□□□□□ -0.18
SHANK1-201ENST00000293441 MS4A6AQ9H2W1 248 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 MYLKQ15746 1914 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 FHL1Q13642 323 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 AMN1Q8IY45 258 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 LINC00479Q96M42 142 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 ZNF503-AS2A6NEH8 195 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 WISP1O95388 367 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 C8orf49Q96NF6 230 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 TMEM242Q9NWH2 141 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 LINC00587B1AMM8 73 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 RASL11AQ6T310 242 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 ZNF833PQ6ZTB9 187 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 Q86TA4 180 aa13.91□□□□□ -0.18
SHANK1-201ENST00000293441 ARMS2P0C7Q2 107 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 TANC1Q9C0D5 1861 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 C17orf58Q2M2W7 97 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 IGKV1-6A0A0C4DH72 117 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 INS-IGF2F8WCM5 200 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 ITGB1BP1O14713 200 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 SPOCK3Q9BQ16 436 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 CLDN16Q9Y5I7 305 aa13.9□□□□□ -0.18
SHANK1-201ENST00000293441 GAGE12JA6NER3 117 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 J3QLI3 93 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE1Q13065 139 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE4Q13068 117 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE5Q13069 117 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE13Q4V321 117 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 LIME1Q9H400 295 aa13.9□□□□□ -0.19
SHANK1-201ENST00000293441 TCTEX1D4Q5JR98 221 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 WDR86Q86TI4 376 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 FNDC10F2Z333 226 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 TRAV8-4A0A0B4J246 113 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 LOXP28300 417 aaPredicted RBP13.89□□□□□ -0.19
SHANK1-201ENST00000293441 ATXN8Q156A1 80 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 REG4Q9BYZ8 158 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 SEC11AP67812 179 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 SPXQ9BT56 116 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 TMEM14BQ9NUH8 114 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 LAMTOR3Q9UHA4 124 aa13.89□□□□□ -0.19
SHANK1-201ENST00000293441 A0A1B0GW64 132 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms