RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SERTM2A0A1B0GWG4 89 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 COX6B1P14854 86 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 COL8A1P27658 744 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 RAB9AP51151 201 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 TOMM20LQ6UXN7 152 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 OR4B1Q8NGF8 309 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 MS4A10Q96PG2 267 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 BBC3Q96PG8 261 aaPredicted RBP10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 GFRA4Q9GZZ7 299 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 PSG8Q9UQ74 426 aa10.06□□□□□ -0.8
SPTLC1-201ENST00000262554 IGHV3-35A0A0C4DH35 117 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 NUPR1O60356 82 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 ESDP10768 282 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 SLC25A16P16260 332 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 CRIP2P52943 208 aaPredicted RBP10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 ATP5G2Q06055 141 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 KIAA1644Q3SXP7 199 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 OR10J3Q5JRS4 329 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 CLEC19AQ6UXS0 136 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 CCDC140Q96MF4 163 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 HIF1ANQ9NWT6 349 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 TP53TG3Q9ULZ0 132 aa10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 SPTAN1Q13813 2472 aaKnown RBP10.05□□□□□ -0.8
SPTLC1-201ENST00000262554 NPIPB6E9PJ23 425 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 M0R3E3 92 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 ZNF253O75346 499 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 SERF1AO75920 110 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 GZMBP10144 247 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 GATA3P23771 443 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 TPPP2P59282 170 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 PAFAH1B2P68402 229 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 C9orf152Q5JTZ5 239 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 TCF24Q7RTU0 167 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 ZNF843Q8N446 348 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 ARL6IP6Q8N6S5 226 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 NRGNQ92686 78 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 SOX21Q9Y651 276 aaPredicted RBP10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 IGHV3OR16-8A0A075B7F1 116 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 TRAV20A0A0B4J274 112 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 FAM231BA6NCW3 169 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 FAM223BA6NKX1 122 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 H3BUX3 64 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 AVPP01185 164 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 RELQ04864 619 aaPredicted RBP10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 C19orf54Q5BKX5 351 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 FAM223AQ8IWN6 122 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 ZC2HC1AQ96GY0 325 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 ATP6V0BQ99437 205 aa10.04□□□□□ -0.8
SPTLC1-201ENST00000262554 M0QZK8 103 aa10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 SRIP30626 198 aa10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 HBBP68871 147 aa10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 SLAQ13239 276 aa10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 LY6EQ16553 131 aa10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 RBPMS2Q6ZRY4 209 aaKnown RBP10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 NOL4LQ96MY1 436 aaPredicted RBP10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 PRDM13Q9H4Q3 707 aa10.03□□□□□ -0.8
SPTLC1-201ENST00000262554 A0A1B0GXF2 115 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 A6NDX4 124 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 LINC00587B1AMM8 73 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 CAMPP49913 170 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 LINC00310P59036 64 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 OR2D3Q8NGH3 330 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 GTSF1Q8WW33 167 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 PGLYRP4Q96LB8 373 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 SMAD5-AS1Q9Y6J3 95 aa10.02□□□□□ -0.8
SPTLC1-201ENST00000262554 FBLL1A6NHQ2 334 aaKnown RBP10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 ZNF785A8K8V0 405 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 TRGV3P03979 118 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 IGF1P05019 195 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 CT45A10P0DMU9 189 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 GDF5OSQ5U4N7 250 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 C16orf54Q6UWD8 224 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 LINC00527Q9UJ94 153 aa10.02□□□□□ -0.81
SPTLC1-201ENST00000262554 USP9XQ93008 2570 aaPredicted RBP10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 F2Z2F3 143 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 BUB3O43684 328 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 C1orf194Q5T5A4 169 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 LINC01356Q8N9X3 169 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 METTL26Q96S19 204 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 SAMD10Q9BYL1 202 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 USP24Q9UPU5 2620 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 FLNCQ14315 2725 aa10.01□□□□□ -0.81
SPTLC1-201ENST00000262554 A0A087X0K7 114 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 CHEK1O14757 476 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 IGHG2P01859 326 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 PRB4P10163 310 aaPredicted RBP10□□□□□ -0.81
SPTLC1-201ENST00000262554 PKIAP61925 76 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 IQCJQ1A5X6 159 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 Q71RC1 249 aaPredicted RBP10□□□□□ -0.81
SPTLC1-201ENST00000262554 COL12A1Q99715 3063 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 A1L4Q6 167 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 CLPSL1A2RUU4 121 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 H3BUA1 57 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 SAPCD1Q5SSQ6 148 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 KCNS1Q96KK3 526 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 C8orf49Q96NF6 230 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 ASCL2Q99929 193 aa10□□□□□ -0.81
SPTLC1-201ENST00000262554 SSBP4Q9BWG4 385 aaPredicted RBP10□□□□□ -0.81
SPTLC1-201ENST00000262554 IGKV2-40A0A087WW87 121 aaPredicted RBP9.99□□□□□ -0.81
SPTLC1-201ENST00000262554 A8MWP6 167 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms