RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 K7ENP7 123 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 M0R3E3 92 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 OVOL3O00110 214 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 MRPS12O15235 138 aaKnown RBP14.74□□□□□ -0.05
CPSF3-201ENST00000238112 ORAOV1Q8WV07 137 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 TIMD4Q96H15 378 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 ZZEF1O43149 2961 aa14.73□□□□□ -0.05
CPSF3-201ENST00000238112 TPRP12270 2363 aaKnown RBP14.73□□□□□ -0.05
CPSF3-201ENST00000238112 LY6HO94772 140 aa14.73□□□□□ -0.05
CPSF3-201ENST00000238112 KLRD1Q13241 179 aa14.73□□□□□ -0.05
CPSF3-201ENST00000238112 IGFBPL1Q8WX77 278 aa14.73□□□□□ -0.05
CPSF3-201ENST00000238112 hDV102S1A0JD36 115 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 NBL1P41271 181 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 MFAP4P55083 255 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 FOXC1Q12948 553 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 PDE6HQ13956 83 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 C5orf64Q2M2E5 130 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 PET117Q6UWS5 81 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 TIMM8BQ9Y5J9 83 aaPredicted RBP14.72□□□□□ -0.05
CPSF3-201ENST00000238112 CRIP1P50238 77 aa14.72□□□□□ -0.05
CPSF3-201ENST00000238112 A0A1W2PRD5 423 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 A0A1W2PRF3 423 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 A0A1W2PRM7 423 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 H0Y8G0 127 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 TCF21O43680 179 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 CSN1S1P47710 185 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 UNQ5815/PRO19632Q6UWF5 114 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 GATD1Q8NB37 220 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 AP5S1Q9NUS5 200 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 NPIPB5A8MRT5 1133 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 M0R1W7 72 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 FBXL19-AS1Q494R0 122 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 C8orf49Q96NF6 230 aa14.71□□□□□ -0.05
CPSF3-201ENST00000238112 IGLV11-55A0A075B6I3 123 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 LOC105371242A0A075B767 164 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 NEU4Q8WWR8 484 aaPredicted RBP14.7□□□□□ -0.06
CPSF3-201ENST00000238112 ARPC1AQ92747 370 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 FANCD2OSQ96PS1 177 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 FA2HQ7L5A8 372 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 BCL6BQ8N143 479 aaPredicted RBP14.7□□□□□ -0.06
CPSF3-201ENST00000238112 ZNF738Q8NE65 137 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 PRSS3P2Q8NHM4 247 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 COX11Q9Y6N1 276 aa14.7□□□□□ -0.06
CPSF3-201ENST00000238112 ODF3BA8MYP8 253 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 SLC25A34Q6PIV7 304 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 ZNF562Q6V9R5 426 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 ZNF48Q96MX3 618 aaPredicted RBP14.69□□□□□ -0.06
CPSF3-201ENST00000238112 SERTM2A0A1B0GWG4 89 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 NCBP2LA6PVI3 153 aaKnown RBP14.69□□□□□ -0.06
CPSF3-201ENST00000238112 PRTN3P24158 256 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 PSG9Q00887 426 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 C21orf62Q9NYP8 219 aa14.69□□□□□ -0.06
CPSF3-201ENST00000238112 SPTBN2O15020 2390 aa14.68□□□□□ -0.06
CPSF3-201ENST00000238112 TMEM189A5PLL7 270 aa14.68□□□□□ -0.06
CPSF3-201ENST00000238112 CCL21O00585 134 aa14.68□□□□□ -0.06
CPSF3-201ENST00000238112 FBLN7Q53RD9 439 aa14.68□□□□□ -0.06
CPSF3-201ENST00000238112 MCRIP2Q9BUT9 160 aaKnown RBP14.68□□□□□ -0.06
CPSF3-201ENST00000238112 THYN1Q9P016 225 aa14.68□□□□□ -0.06
CPSF3-201ENST00000238112 TP73-AS1Q9UF72 201 aa14.68□□□□□ -0.06
CPSF3-201ENST00000238112 PTTG1IPP53801 180 aa14.67□□□□□ -0.06
CPSF3-201ENST00000238112 TMSB15BA0A087X1C1 80 aa14.67□□□□□ -0.06
CPSF3-201ENST00000238112 CCDC144NLQ6NUI1 221 aa14.67□□□□□ -0.06
CPSF3-201ENST00000238112 Q6ZVH6 145 aa14.67□□□□□ -0.06
CPSF3-201ENST00000238112 TTC9CQ8N5M4 171 aa14.67□□□□□ -0.06
CPSF3-201ENST00000238112 OR10AG1Q8NH19 301 aa14.67□□□□□ -0.06
CPSF3-201ENST00000238112 SCGB2A1O75556 95 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 LYZL1Q6UWQ5 148 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 ZNF493Q6ZR52 646 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 PPP1R14DQ9NXH3 145 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 ANKHD1Q8IWZ3 2542 aaKnown RBP14.66□□□□□ -0.06
CPSF3-201ENST00000238112 F8W735 103 aaPredicted RBP14.66□□□□□ -0.06
CPSF3-201ENST00000238112 IGHV3-23P01764 117 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 RPL7P18124 248 aaKnown RBP14.66□□□□□ -0.06
CPSF3-201ENST00000238112 NDPQ00604 133 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 LINC01545Q5VT33 79 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 MS4A6AQ9H2W1 248 aa14.66□□□□□ -0.06
CPSF3-201ENST00000238112 SH2D1AO60880 128 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 MPV17L2Q567V2 206 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 SCRT2Q9NQ03 307 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 IGKV2-40A0A087WW87 121 aaPredicted RBP14.65□□□□□ -0.06
CPSF3-201ENST00000238112 OR2T8A6NH00 312 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 IGKV2D-40P01614 121 aaPredicted RBP14.65□□□□□ -0.06
CPSF3-201ENST00000238112 SAPCD1Q5SSQ6 148 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 PMCHL2Q9BQD1 86 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 ZNF747Q9BV97 191 aa14.65□□□□□ -0.06
CPSF3-201ENST00000238112 TLN1Q9Y490 2541 aaKnown RBP14.65□□□□□ -0.06
CPSF3-201ENST00000238112 TACC2O95359 2948 aa14.64□□□□□ -0.07
CPSF3-201ENST00000238112 CCL25O15444 150 aa14.64□□□□□ -0.07
CPSF3-201ENST00000238112 D6R8Y8 96 aa14.64□□□□□ -0.07
CPSF3-201ENST00000238112 RELQ04864 619 aaPredicted RBP14.64□□□□□ -0.07
CPSF3-201ENST00000238112 VMO1Q7Z5L0 202 aa14.64□□□□□ -0.07
CPSF3-201ENST00000238112 TMEM213A2RRL7 107 aa14.63□□□□□ -0.07
CPSF3-201ENST00000238112 NUDT3O95989 172 aa14.63□□□□□ -0.07
CPSF3-201ENST00000238112 IFI27P40305 119 aaPredicted RBP14.63□□□□□ -0.07
CPSF3-201ENST00000238112 UBE2V1Q13404 147 aa14.63□□□□□ -0.07
CPSF3-201ENST00000238112 RABAC1Q9UI14 185 aa14.63□□□□□ -0.07
CPSF3-201ENST00000238112 ARHGAP32A7KAX9 2087 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 LOC389332A0A1B0GUA5 103 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 FAM104BQ5XKR9 115 aa14.62□□□□□ -0.07
CPSF3-201ENST00000238112 AMN1Q8IY45 258 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms