RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C16orf95Q9H693 158 aa15.42■□□□□ 0.06
CLN3-250ENST00000636839 ZNF320A2RRD8 509 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 SUN5Q8TC36 379 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 KRBOX1C9JBD0 128 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 GGCTO75223 188 aaKnown RBP15.41■□□□□ 0.06
CLN3-250ENST00000636839 CD28P10747 220 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 EDN2P20800 178 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 NPPCP23582 126 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 KHDC1LQ5JSQ8 128 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 TMEM167BQ9NRX6 74 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 ZNF586Q9NXT0 402 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 SELENOKQ9Y6D0 94 aa15.41■□□□□ 0.06
CLN3-250ENST00000636839 IGHV4OR15-8A0A075B7B6 117 aa15.4■□□□□ 0.06
CLN3-250ENST00000636839 A0A087WW49 117 aa15.4■□□□□ 0.06
CLN3-250ENST00000636839 MRPS12O15235 138 aaKnown RBP15.4■□□□□ 0.06
CLN3-250ENST00000636839 APOC3P02656 99 aa15.4■□□□□ 0.06
CLN3-250ENST00000636839 LGALS1P09382 135 aaKnown RBP15.4■□□□□ 0.06
CLN3-250ENST00000636839 DUX3Q96PT4 197 aa15.4■□□□□ 0.06
CLN3-250ENST00000636839 GGTLC3B5MD39 225 aa15.39■□□□□ 0.05
CLN3-250ENST00000636839 PRB4P10163 310 aaPredicted RBP15.39■□□□□ 0.05
CLN3-250ENST00000636839 GUCA2BQ16661 112 aa15.39■□□□□ 0.05
CLN3-250ENST00000636839 NDUFA4O00483 81 aa15.39■□□□□ 0.05
CLN3-250ENST00000636839 NBEAP1P0C6P0 100 aa15.39■□□□□ 0.05
CLN3-250ENST00000636839 RANP62826 216 aaKnown RBP15.39■□□□□ 0.05
CLN3-250ENST00000636839 C2CD3Q4AC94 2353 aa15.39■□□□□ 0.05
CLN3-250ENST00000636839 BUB3O43684 328 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 TM4SF20Q53R12 229 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 FAM209BQ5JX69 171 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 JMJD1CQ15652 2540 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 SUMO1P63165 101 aaKnown RBP15.38■□□□□ 0.05
CLN3-250ENST00000636839 C10orf91Q5T1B1 145 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 FAM90A2PQ658T7 463 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 STXBP6Q8NFX7 210 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 METTL26Q96S19 204 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 SMDT1Q9H4I9 107 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 TMEM14CQ9P0S9 112 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 SMAD5-AS1Q9Y6J3 95 aa15.38■□□□□ 0.05
CLN3-250ENST00000636839 A0A1W2PRX2 142 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 IGLC2P0DOY2 106 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 CRYBB3P26998 211 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 SOHLH1Q5JUK2 328 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 BPIFA4PQ86YQ2 179 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 OR8I2Q8N0Y5 310 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 DERL1Q9BUN8 251 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 SEC11CQ9BY50 192 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 RNF114Q9Y508 228 aa15.37■□□□□ 0.05
CLN3-250ENST00000636839 SCO2A0A1W2PP80 73 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 NDUFA7O95182 113 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 CDX1P47902 265 aaPredicted RBP15.36■□□□□ 0.05
CLN3-250ENST00000636839 CCDC28AQ8IWP9 274 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 TMEM190Q8WZ59 177 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 SLC17A3O00476 420 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 NDUFB4O95168 129 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 RPEL1Q2QD12 228 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 ATRAIDQ6UW56 229 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 RPUSD4Q96CM3 377 aaKnown RBP15.36■□□□□ 0.05
CLN3-250ENST00000636839 CITED2Q99967 270 aaPredicted RBP15.36■□□□□ 0.05
CLN3-250ENST00000636839 U3KQE9 123 aa15.36■□□□□ 0.05
CLN3-250ENST00000636839 HIST1H1EP10412 219 aaKnown RBP15.35■□□□□ 0.05
CLN3-250ENST00000636839 KLHL30-AS1Q8NEE0 82 aa15.35■□□□□ 0.05
CLN3-250ENST00000636839 ELOVL1Q9BW60 279 aa15.35■□□□□ 0.05
CLN3-250ENST00000636839 A0A1W2PRE2 83 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 SCO1O75880 301 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 HOXD3P31249 432 aaPredicted RBP15.34■□□□□ 0.05
CLN3-250ENST00000636839 SYNJ2BPP57105 145 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 ZNF674Q2M3X9 581 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 C8orf86Q6ZUL3 223 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 GPHB5Q86YW7 130 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 EXOC3-AS1Q8N2X6 119 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 CARHSP1Q9Y2V2 147 aaKnown RBP15.34■□□□□ 0.05
CLN3-250ENST00000636839 TAGLN2P37802 199 aaKnown RBP15.34■□□□□ 0.05
CLN3-250ENST00000636839 SLURP1P55000 103 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 PROK1P58294 105 aa15.34■□□□□ 0.05
CLN3-250ENST00000636839 TRBV19A0A075B6N1 114 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 KRTAP10-3P60369 221 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 OR11H1Q8NG94 326 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 OR4F17Q8NGA8 305 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 C4orf3Q8WVX3 66 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 MYCNOSP40205 109 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 GNG5P63218 68 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 FAM106AQ4KMX7 169 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 IGFL4Q6B9Z1 124 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 Q9H3A6 140 aa15.33■□□□□ 0.04
CLN3-250ENST00000636839 MAST4O15021 2626 aa15.32■□□□□ 0.04
CLN3-250ENST00000636839 PGPA6NDG6 321 aa15.32■□□□□ 0.04
CLN3-250ENST00000636839 RPL7P18124 248 aaKnown RBP15.32■□□□□ 0.04
CLN3-250ENST00000636839 LINC00479Q96M42 142 aa15.32■□□□□ 0.04
CLN3-250ENST00000636839 PARLQ9H300 379 aa15.32■□□□□ 0.04
CLN3-250ENST00000636839 TMEM250H0YL14 139 aa15.31■□□□□ 0.04
CLN3-250ENST00000636839 PDE6DO43924 150 aa15.31■□□□□ 0.04
CLN3-250ENST00000636839 S100A7AQ86SG5 101 aa15.31■□□□□ 0.04
CLN3-250ENST00000636839 OR1N2Q8NGR9 330 aa15.31■□□□□ 0.04
CLN3-250ENST00000636839 DAZ1Q9NQZ3 744 aaKnown RBP15.31■□□□□ 0.04
CLN3-250ENST00000636839 ARL2-SNX15V9GYD0 113 aa15.31■□□□□ 0.04
CLN3-250ENST00000636839 C16orf54Q6UWD8 224 aa15.3■□□□□ 0.04
CLN3-250ENST00000636839 IGHV7-4-1A0A0J9YVY3 117 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 TMEM213A2RRL7 107 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 ZNF727A8MUV8 499 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 SIGLEC15Q6ZMC9 328 aa15.29■□□□□ 0.04
CLN3-250ENST00000636839 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms