RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 C1orf134Q5TEV5 83 aa12.64□□□□□ -0.39
SHKBP1-227ENST00000602011 RSG1Q9BU20 258 aa12.64□□□□□ -0.39
SHKBP1-227ENST00000602011 PRR13Q9NZ81 148 aa12.64□□□□□ -0.39
SHKBP1-227ENST00000602011 DEFB1P60022 68 aa12.63□□□□□ -0.39
SHKBP1-227ENST00000602011 ZNF575Q86XF7 245 aa12.63□□□□□ -0.39
SHKBP1-227ENST00000602011 TMEM147Q9BVK8 224 aa12.63□□□□□ -0.39
SHKBP1-227ENST00000602011 IGKV1OR2-108A0A075B7D4 117 aa12.62□□□□□ -0.39
SHKBP1-227ENST00000602011 SYNGR2O43760 224 aa12.62□□□□□ -0.39
SHKBP1-227ENST00000602011 HTN3P15516 51 aa12.62□□□□□ -0.39
SHKBP1-227ENST00000602011 AMTNQ6UX39 209 aa12.62□□□□□ -0.39
SHKBP1-227ENST00000602011 PAIP2BQ9ULR5 123 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-227ENST00000602011 IGLV2-18A0A075B6J9 118 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 F6UB75 175 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 INSP01308 110 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 TMEM88Q6PEY1 159 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 LINC00299Q6ZSB3 139 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 SLC25A32Q9H2D1 315 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 SLC25A22Q9H936 323 aa12.61□□□□□ -0.39
SHKBP1-227ENST00000602011 IAPPP10997 89 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 RPL7P18124 248 aaKnown RBP12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 ORM2P19652 201 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 TMEM144Q7Z5S9 345 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 TMED4Q7Z7H5 227 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 TMEM256Q8N2U0 113 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 TOMM5Q8N4H5 51 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 ATG101Q9BSB4 218 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 PLA2G2EQ9NZK7 142 aa12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 STRAPQ9Y3F4 350 aaKnown RBP12.6□□□□□ -0.39
SHKBP1-227ENST00000602011 PRSS46E5RG02 174 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 VAMP1P23763 118 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 CNN1P51911 297 aaKnown RBP12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 RAP2BP61225 183 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 SELENOTP62341 195 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 CNPY1Q3B7I2 92 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 SPANXN2Q5MJ10 180 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 CCDC190Q86UF4 302 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 OR11H7Q8NGC8 314 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 C20orf173Q96LM9 149 aa12.59□□□□□ -0.39
SHKBP1-227ENST00000602011 WRBO00258 174 aa12.58□□□□□ -0.4
SHKBP1-227ENST00000602011 SFT2D2O95562 160 aa12.58□□□□□ -0.4
SHKBP1-227ENST00000602011 UBE2MP61081 183 aaKnown RBP12.58□□□□□ -0.4
SHKBP1-227ENST00000602011 AKR1C1Q04828 323 aa12.58□□□□□ -0.4
SHKBP1-227ENST00000602011 SPANXN5Q5MJ07 72 aa12.58□□□□□ -0.4
SHKBP1-227ENST00000602011 CBY3A6NI87 242 aa12.57□□□□□ -0.4
SHKBP1-227ENST00000602011 HYPMO75409 117 aa12.57□□□□□ -0.4
SHKBP1-227ENST00000602011 IL5P05113 134 aa12.57□□□□□ -0.4
SHKBP1-227ENST00000602011 PLP1P60201 277 aa12.57□□□□□ -0.4
SHKBP1-227ENST00000602011 C17orf77Q96MU5 243 aa12.57□□□□□ -0.4
SHKBP1-227ENST00000602011 CRXO43186 299 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 ATP5G1P05496 136 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 ATP5G3P48201 142 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 CCL18P55774 89 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 TAS2R60P59551 318 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 ID3Q02535 119 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 ZNF493Q6ZR52 646 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 SHANK2-AS3Q9BTD1 123 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 SLC25A39Q9BZJ4 359 aaPredicted RBP12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 PPP1R14DQ9NXH3 145 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 PTTG2Q9NZH5 202 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 HIGD1AQ9Y241 93 aa12.56□□□□□ -0.4
SHKBP1-227ENST00000602011 FNDC10F2Z333 226 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 H3BRN7 92 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 BOLA2-SMG1P6H3BVE0 249 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 SPINK13Q1W4C9 94 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 C4orf46Q504U0 113 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 PYDC2Q56P42 97 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 PXDC1Q5TGL8 231 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 CYP2G1PQ6ZSU1 146 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 ZNF738Q8NE65 137 aa12.55□□□□□ -0.4
SHKBP1-227ENST00000602011 A0A087X0K7 114 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 TRAV8-2A0A0B4J237 113 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 ZNF705GA8MUZ8 300 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 HOXB5P09067 269 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 DEFB130BP0DP73 79 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 DEFB130AP0DP74 79 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 GATA2P23769 480 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 FGL1Q08830 312 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 ACOT7LQ6ZUV0 252 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 LRRC20Q8TCA0 184 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 TRIM63Q969Q1 353 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 C16orf74Q96GX8 76 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 LINC01587Q99440 93 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 C20orf144Q9BQM9 153 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 NPVFQ9HCQ7 196 aa12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 TIMM8BQ9Y5J9 83 aaPredicted RBP12.54□□□□□ -0.4
SHKBP1-227ENST00000602011 NBDYA0A0U1RRE5 68 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 F5H768 121 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 M0R2Z0 102 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 CXCL2P19875 107 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 RHOBP62745 196 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 PPP1R1AQ13522 171 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 PSG3Q16557 428 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 TMEM182Q6ZP80 229 aaPredicted RBP12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 OR8A1Q8NGG7 326 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 S100ZQ8WXG8 99 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 V9GYH0 126 aa12.53□□□□□ -0.4
SHKBP1-227ENST00000602011 K7EPK0 472 aa12.52□□□□□ -0.41
SHKBP1-227ENST00000602011 ADAP1O75689 374 aa12.52□□□□□ -0.41
SHKBP1-227ENST00000602011 CXCL3P19876 107 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms