RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SSX7Q7RTT5 188 aa6.02□□□□□ -1.45
SHKBP1-220ENST00000599716 OR1S1Q8NH92 325 aa6.02□□□□□ -1.45
SHKBP1-220ENST00000599716 CLUHP3Q96NS8 147 aa6.02□□□□□ -1.45
SHKBP1-220ENST00000599716 PARD6GQ9BYG4 376 aaPredicted RBP6.02□□□□□ -1.45
SHKBP1-220ENST00000599716 U3KQ87 197 aa6.02□□□□□ -1.45
SHKBP1-220ENST00000599716 A8MTW9 85 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 H3BP45 60 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 B3GALNT1O75752 331 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 INSP01308 110 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 AKAIN1P0CW23 69 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 GPX4P36969 197 aaPredicted RBP6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 NUP62P37198 522 aaPredicted RBP6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 CCR6P51684 374 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 C1orf194Q5T5A4 169 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 SERTAD4-AS1Q5TG53 156 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 NOXA1Q86UR1 476 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 CLVS1Q8IUQ0 354 aaPredicted RBP6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 OR1B1Q8NGR6 318 aa6.01□□□□□ -1.45
SHKBP1-220ENST00000599716 KRTAP9-6A0A140TA67 174 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 LYRM9A8MSI8 78 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 WRBO00258 174 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 ATP5G1P05496 136 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 SMIM18P0DKX4 95 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 GALR1P47211 349 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 ATP5G3P48201 142 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 CCL18P55774 89 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 RHOBP62745 196 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 HIST1H1AQ02539 215 aaPredicted RBP6□□□□□ -1.45
SHKBP1-220ENST00000599716 OR5I1Q13606 314 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 IL18Q14116 193 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 CLINT1Q14677 625 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 SPCS2Q15005 226 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 SURF2Q15527 256 aaPredicted RBP6□□□□□ -1.45
SHKBP1-220ENST00000599716 SPATA31B1PQ5VZV4 182 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 THAP8Q8NA92 274 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 SYT8Q8NBV8 401 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 ZNF738Q8NE65 137 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 SMIM4Q8WVI0 70 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 AP3S1Q92572 193 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 LINC01587Q99440 93 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 TRGV9Q99603 122 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 Q9H8V8 135 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 NOP10Q9NPE3 64 aaKnown RBP6□□□□□ -1.45
SHKBP1-220ENST00000599716 MCUBQ9NWR8 336 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 PFDN2Q9UHV9 154 aa6□□□□□ -1.45
SHKBP1-220ENST00000599716 TRAV26-1A0A087WT03 109 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 A0A0B4J2A0 478 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 PRSS46E5RG02 174 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 H3BTX0 84 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 BOLA2-SMG1P6H3BVE0 249 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 J3KRW8 73 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 HOXA5P20719 270 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 FAM3BP58499 235 aaPredicted RBP5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 ACOT7LQ6ZUV0 252 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 TMED4Q7Z7H5 227 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 IL22RA2Q969J5 263 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 SHPKQ9UHJ6 478 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 KCNIP3Q9Y2W7 256 aa5.99□□□□□ -1.45
SHKBP1-220ENST00000599716 FAT4Q6V0I7 4981 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 ANKRD20A5PA0PJZ0 165 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 GAGE12BA1L429 117 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 SMCO3A2RU48 225 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 CBY3A6NI87 242 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 PITX3O75364 302 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 CCNKO75909 580 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 GAGE7O76087 117 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 FABP1P07148 127 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 GAGE12FP0CL80 117 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 GAGE12GP0CL81 117 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 GAGE12IP0CL82 117 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 ALDH3B2P48448 385 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 MEOX2P50222 304 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 RAB11AP62491 216 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 AKR1C1Q04828 323 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 ESRGQ1W209 222 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 SPANXN5Q5MJ07 72 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 OR8A1Q8NGG7 326 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 DIRAS2Q96HU8 199 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 PRRT1Q99946 306 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 TMEM147Q9BVK8 224 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 KRTAP9-2Q9BYQ4 174 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 ZNF586Q9NXT0 402 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 TNFRSF18Q9Y5U5 241 aa5.98□□□□□ -1.45
SHKBP1-220ENST00000599716 PRAC2D3DTV9 90 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 H3BRN7 92 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 ZNF701M0R085 212 aaPredicted RBP5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 DUSP14O95147 198 aaKnown RBP5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 HOXB5P09067 269 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 VAMP1P23763 118 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 TSPOP30536 169 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 RRAS2P62070 204 aaPredicted RBP5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 HAMPP81172 84 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 GGNBP1Q5YKI7 109 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 GPR141Q7Z602 305 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 BPIFCQ8NFQ6 507 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 GNPNAT1Q96EK6 184 aaPredicted RBP5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 MUC2Q02817 5179 aa5.97□□□□□ -1.45
SHKBP1-220ENST00000599716 OR5G3P0C626 314 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 CXCL3P19876 107 aa5.96□□□□□ -1.46
SHKBP1-220ENST00000599716 LINC00315P59091 139 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms