RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 MRPL23Q16540 153 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 GTF2H5Q6ZYL4 71 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 ERASQ7Z444 233 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 OR10W1Q8NGF6 305 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 OR4D5Q8NGN0 318 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGF2BP2-AS1Q96M15 143 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 Q9HAA7 133 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGHV3-73A0A0B4J1V6 119 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 H7C2G1 150 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGLV1-44P01699 117 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 HLA-DQA1P01909 254 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 BCL2P10415 239 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 SCGB1A1P11684 91 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 AZU1P20160 251 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 HOXD3P31249 432 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 SUPT4H1P63272 117 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 MEF2BQ02080 365 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 ERCC8Q13216 396 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PDZD11Q5EBL8 140 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 WIPF2Q8TF74 440 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 C1orf159Q96HA4 380 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 AURKAIP1Q9NWT8 199 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PSG8Q9UQ74 426 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 TP53BP1Q12888 1972 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TRBV25-1A0A075B6N4 114 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A1B0GUT8 65 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A1B0GW64 132 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 IGHV2-70P01814 119 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 C1QCP02747 245 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 IGHV4-38-2P0DP08 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 FOLR2P14207 255 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 CCL1P22362 96 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 RPL29P47914 159 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 P2RY4P51582 365 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF79Q15937 498 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 VAMP8Q9BV40 100 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 SLIRPQ9GZT3 109 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM126AQ9H061 195 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ICOSQ9Y6W8 199 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE12JA6NER3 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 F2Z2F3 143 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 M0R143 59 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 IGLV2-23P01705 113 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 RPLP1P05386 114 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 SFTA3P0C7M3 94 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 LYL1P12980 280 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 GATA2P23769 480 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 SSBP2P81877 361 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE1Q13065 139 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE4Q13068 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE5Q13069 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE13Q4V321 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 NHLRC3Q5JS37 347 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 DUX4L9Q6RFH8 374 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 UQCC3Q6UW78 93 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF493Q6ZR52 646 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 OR10AG1Q8NH19 301 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 C11orf45Q8TAV5 145 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 NCOR1P1Q9H4R4 102 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 CYSLTR1Q9Y271 337 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 FOCADQ5VW36 1801 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 HMSDA8MTL9 139 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 INS-IGF2F8WCM5 200 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 UBE2CO00762 179 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TSPAN13O95857 204 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 PPIFP30405 207 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 SPINK13Q1W4C9 94 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TEX36Q5VZQ5 186 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TREML4Q6UXN2 200 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM136Q6ZRR5 245 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 Q8NA96 180 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TRGV9Q99603 122 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 CITED2Q99967 270 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 WFDC6Q9BQY6 131 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 SPXQ9BT56 116 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ANAPC10Q9UM13 185 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ABCA12Q86UK0 2595 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 BRCA2P51587 3418 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 PSME4Q14997 1843 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TRAV5A0A0B4J249 113 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TRAV34A0A0B4J273 112 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TRAV25A0A0B4J276 109 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A0J9YY99 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 H3BVH4 76 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ITGB1BP1O14713 200 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 LY6G6CO95867 125 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 IGKV1D-12P01611 117 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 RPL32P62910 135 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 AANATQ16613 207 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 C14orf177Q52M58 125 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF880Q6PDB4 577 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 FAM89BQ8N5H3 189 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 CFHR4Q92496 578 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 TP53RKQ96S44 253 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 ATP6V0BQ99437 205 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 PSMG3Q9BT73 122 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 SMDT1Q9H4I9 107 aa2.36□□□□□ -2.03
SMCHD1-203ENST00000577880 KIAA1671Q9BY89 1806 aa2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 YLPM1P49750 1951 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-203ENST00000577880 KIAA2026Q5HYC2 2103 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 252 ms