RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 C16orf92Q96LL3 132 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 HRH4Q9H3N8 390 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 C11orf1Q9H5F2 150 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 XCL2Q9UBD3 114 aa14.7□□□□□ -0.06
CLK3-225ENST00000569063 LSM5Q9Y4Y9 91 aaKnown RBP14.7□□□□□ -0.06
CLK3-225ENST00000569063 SLC38A11Q08AI6 406 aa14.69□□□□□ -0.06
CLK3-225ENST00000569063 IL15RAQ13261 267 aa14.69□□□□□ -0.06
CLK3-225ENST00000569063 C20orf173Q96LM9 149 aa14.69□□□□□ -0.06
CLK3-225ENST00000569063 RPRMQ9NS64 109 aa14.69□□□□□ -0.06
CLK3-225ENST00000569063 DNAH1Q9P2D7 4330 aa14.69□□□□□ -0.06
CLK3-225ENST00000569063 OR5G3P0C626 314 aa14.68□□□□□ -0.06
CLK3-225ENST00000569063 PXDC1Q5TGL8 231 aa14.68□□□□□ -0.06
CLK3-225ENST00000569063 EBLN2Q6P2I7 272 aa14.68□□□□□ -0.06
CLK3-225ENST00000569063 S100A7AQ86SG5 101 aa14.68□□□□□ -0.06
CLK3-225ENST00000569063 ZNF546Q86UE3 836 aa14.68□□□□□ -0.06
CLK3-225ENST00000569063 LINC00476Q8WZB0 136 aa14.68□□□□□ -0.06
CLK3-225ENST00000569063 A0A0J9YX75 114 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 GOSR2O14653 212 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 AGPAT2O15120 278 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 IGKV3-20P01619 116 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 RPL7P18124 248 aaKnown RBP14.67□□□□□ -0.06
CLK3-225ENST00000569063 PVALBP20472 110 aaPredicted RBP14.67□□□□□ -0.06
CLK3-225ENST00000569063 BCAP31P51572 246 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 CAV2P51636 162 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 IFITM3Q01628 133 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 PATE2Q6UY27 113 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 ZNF709Q8N972 641 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 ENKURQ8TC29 256 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 UHRF2Q96PU4 802 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 ARL6Q9H0F7 186 aa14.67□□□□□ -0.06
CLK3-225ENST00000569063 ELOA3CA0A087WX78 387 aaPredicted RBP14.66□□□□□ -0.06
CLK3-225ENST00000569063 F6UB75 175 aa14.66□□□□□ -0.06
CLK3-225ENST00000569063 ZNF705AQ6ZN79 300 aaPredicted RBP14.66□□□□□ -0.06
CLK3-225ENST00000569063 OR4B1Q8NGF8 309 aa14.66□□□□□ -0.06
CLK3-225ENST00000569063 RNF24Q9Y225 148 aa14.66□□□□□ -0.06
CLK3-225ENST00000569063 PLECQ15149 4684 aaKnown RBP14.66□□□□□ -0.06
CLK3-225ENST00000569063 FAM24AA6NFZ4 105 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 CST7O76096 145 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 PSG9Q00887 426 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 RAB32Q13637 225 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 FAM78BQ5VT40 261 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 NEU1Q99519 415 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 MGST2Q99735 147 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 ARV1Q9H2C2 271 aa14.65□□□□□ -0.06
CLK3-225ENST00000569063 GPN1Q9HCN4 374 aaPredicted RBP14.65□□□□□ -0.06
CLK3-225ENST00000569063 LYRM2Q9NU23 88 aaPredicted RBP14.65□□□□□ -0.06
CLK3-225ENST00000569063 A0A087X0K7 114 aa14.64□□□□□ -0.07
CLK3-225ENST00000569063 TRAV8-2A0A0B4J237 113 aa14.64□□□□□ -0.07
CLK3-225ENST00000569063 A8MTW9 85 aa14.64□□□□□ -0.07
CLK3-225ENST00000569063 ZNF705FA8MVS1 300 aaPredicted RBP14.64□□□□□ -0.07
CLK3-225ENST00000569063 ZNF705DP0CH99 300 aaPredicted RBP14.64□□□□□ -0.07
CLK3-225ENST00000569063 ZNF705BP0CI00 300 aaPredicted RBP14.64□□□□□ -0.07
CLK3-225ENST00000569063 FXYD7P58549 80 aa14.64□□□□□ -0.07
CLK3-225ENST00000569063 S100A10P60903 97 aa14.64□□□□□ -0.07
CLK3-225ENST00000569063 HYDINQ4G0P3 5121 aa14.64□□□□□ -0.07
CLK3-225ENST00000569063 C11orf94C9JXX5 98 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 LY6G6CO95867 125 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 SULT1A1P50225 295 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 FGL1Q08830 312 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 VWC2Q2TAL6 325 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 NRARPQ7Z6K4 114 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 TMEM252Q8N6L7 170 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 SLC35B3Q9H1N7 401 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 UQCC1Q9NVA1 299 aa14.63□□□□□ -0.07
CLK3-225ENST00000569063 SMIM9A6NGZ8 99 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 MRPS12O15235 138 aaKnown RBP14.62□□□□□ -0.07
CLK3-225ENST00000569063 S100A11P31949 105 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 RAB31Q13636 194 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 IGFL4Q6B9Z1 124 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 LINC00305Q7Z4B0 112 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 C2CD4CQ8TF44 421 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 BATF3Q9NR55 127 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 WDR83OSQ9Y284 106 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 ALMS1Q8TCU4 4167 aa14.62□□□□□ -0.07
CLK3-225ENST00000569063 IGSF23A1L1A6 192 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 PRAF2O60831 178 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 HLA-DMBP28068 263 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 CAMLGP49069 296 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 AMTNQ6UX39 209 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 STX12Q86Y82 276 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 RNF182Q8N6D2 247 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 TMEM37Q8WXS4 190 aa14.61□□□□□ -0.07
CLK3-225ENST00000569063 INMT-MINDY4F8WBC2 141 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 COX7A2P2O60397 106 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 DUSP14O95147 198 aaKnown RBP14.6□□□□□ -0.07
CLK3-225ENST00000569063 TCTAP57738 103 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 HBG1P69891 147 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 HBG2P69892 147 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 PRR20EP86478 221 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 PRR20CP86479 221 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 PRR20DP86480 221 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 PRR20BP86481 221 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 PRR20AP86496 221 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 MARVELD1Q9BSK0 173 aa14.6□□□□□ -0.07
CLK3-225ENST00000569063 CXCL2P19875 107 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 CXCL3P19876 107 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 CNN1P51911 297 aaKnown RBP14.59□□□□□ -0.07
CLK3-225ENST00000569063 C10orf113Q5VZT2 155 aa14.59□□□□□ -0.07
CLK3-225ENST00000569063 Q6ZRG5 221 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms