RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 IGF2BP2-AS1Q96M15 143 aa12.14□□□□□ -0.47
CLN3-216ENST00000565316 TRAV8-2A0A0B4J237 113 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 IFNA21P01568 189 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 S100A7P31151 101 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 UBE2MP61081 183 aaKnown RBP12.13□□□□□ -0.47
CLN3-216ENST00000565316 ID3Q02535 119 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 RNF212Q495C1 297 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 SPANXN5Q5MJ07 72 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 TMEM144Q7Z5S9 345 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 TMEM147Q9BVK8 224 aa12.13□□□□□ -0.47
CLN3-216ENST00000565316 STRAPQ9Y3F4 350 aaKnown RBP12.13□□□□□ -0.47
CLN3-216ENST00000565316 DUSP14O95147 198 aaKnown RBP12.12□□□□□ -0.47
CLN3-216ENST00000565316 ACOT7LQ6ZUV0 252 aa12.12□□□□□ -0.47
CLN3-216ENST00000565316 CCDC190Q86UF4 302 aa12.12□□□□□ -0.47
CLN3-216ENST00000565316 H3BP45 60 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 H3BRN7 92 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 CRXO43186 299 aaPredicted RBP12.11□□□□□ -0.47
CLN3-216ENST00000565316 CNN1P51911 297 aaKnown RBP12.11□□□□□ -0.47
CLN3-216ENST00000565316 AKR1C1Q04828 323 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 UBE2DNLQ8IWF7 75 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 OR11H7Q8NGC8 314 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 SHANK2-AS3Q9BTD1 123 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 MED14OSP0DP75 135 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 HTN3P15516 51 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 PLP1P60201 277 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 DAD1P61803 113 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 TMEM88Q6PEY1 159 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 CYP2G1PQ6ZSU1 146 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 TMEM208Q9BTX3 173 aa12.11□□□□□ -0.47
CLN3-216ENST00000565316 SLC25A39Q9BZJ4 359 aaPredicted RBP12.11□□□□□ -0.47
CLN3-216ENST00000565316 C9orf170A2RU37 121 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 PMS2P5A8MQ11 134 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 ADAP1O75689 374 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 INSP01308 110 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 TSPOP30536 169 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 S100A5P33763 92 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 POLR2GP62487 172 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLN3-216ENST00000565316 IGFL4Q6B9Z1 124 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 RNF182Q8N6D2 247 aa12.1□□□□□ -0.47
CLN3-216ENST00000565316 IGLV2-18A0A075B6J9 118 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 LYRM9A8MSI8 78 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 M0R2Z0 102 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 HYPMO75409 117 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 IL5P05113 134 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 RPL7P18124 248 aaKnown RBP12.09□□□□□ -0.47
CLN3-216ENST00000565316 B2MP61769 119 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 SELENOTP62341 195 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 SPINK13Q1W4C9 94 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 SMIM8Q96KF7 97 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 HIGD1AQ9Y241 93 aa12.09□□□□□ -0.47
CLN3-216ENST00000565316 ZNF705GA8MUZ8 300 aaPredicted RBP12.08□□□□□ -0.48
CLN3-216ENST00000565316 NDUFB6O95139 128 aa12.08□□□□□ -0.48
CLN3-216ENST00000565316 PRM2P04554 102 aa12.08□□□□□ -0.48
CLN3-216ENST00000565316 RAP2BP61225 183 aa12.08□□□□□ -0.48
CLN3-216ENST00000565316 C15orf53Q8NAA6 179 aa12.08□□□□□ -0.48
CLN3-216ENST00000565316 SRRQ9GZT4 340 aa12.08□□□□□ -0.48
CLN3-216ENST00000565316 PSENENQ9NZ42 101 aa12.08□□□□□ -0.48
CLN3-216ENST00000565316 A0A087X0K7 114 aa12.07□□□□□ -0.48
CLN3-216ENST00000565316 SMCO3A2RU48 225 aa12.07□□□□□ -0.48
CLN3-216ENST00000565316 FNDC10F2Z333 226 aa12.07□□□□□ -0.48
CLN3-216ENST00000565316 K7EPK0 472 aa12.07□□□□□ -0.48
CLN3-216ENST00000565316 FAM3BP58499 235 aaPredicted RBP12.07□□□□□ -0.48
CLN3-216ENST00000565316 DLK1P80370 383 aa12.07□□□□□ -0.48
CLN3-216ENST00000565316 TMEM14EPQ6UXP3 125 aa12.07□□□□□ -0.48
CLN3-216ENST00000565316 PLAC8L1A1L4L8 177 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 NAP1L6A6NFF2 107 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 BOLA2-SMG1P6H3BVE0 249 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 SSSCA1O60232 199 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 LINC00869P0C866 280 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 CXCL3P19876 107 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 FGL1Q08830 312 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 SPANXN2Q5MJ10 180 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 BAP18Q8IXM2 172 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 ZNF738Q8NE65 137 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 OR8A1Q8NGG7 326 aa12.06□□□□□ -0.48
CLN3-216ENST00000565316 CCNKO75909 580 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 AZU1P20160 251 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 PSG3Q16557 428 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 SOHLH1Q5JUK2 328 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 PATE2Q6UY27 113 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 S100A7AQ86SG5 101 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 UHRF2Q96PU4 802 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 RBM38Q9H0Z9 239 aaKnown RBP12.05□□□□□ -0.48
CLN3-216ENST00000565316 NPVFQ9HCQ7 196 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 FLVCR2Q9UPI3 526 aa12.05□□□□□ -0.48
CLN3-216ENST00000565316 NACAE9PAV3 2078 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 TRAV12-2A0A075B6T6 113 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 MRPS12O15235 138 aaKnown RBP12.04□□□□□ -0.48
CLN3-216ENST00000565316 OR5G3P0C626 314 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 OR4E1P0C645 316 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 BAK1Q16611 211 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 TMEM256Q8N2U0 113 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 ABCA13Q86UQ4 5058 aa12.04□□□□□ -0.48
CLN3-216ENST00000565316 CCDC160A6NGH7 325 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 METTL15P1P0C7V9 234 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 DEFB130BP0DP73 79 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 DEFB130AP0DP74 79 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 TAS2R30P59541 319 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 RRAS2P62070 204 aaPredicted RBP12.03□□□□□ -0.48
CLN3-216ENST00000565316 HIST1H1AQ02539 215 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms