RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 NEU4Q8WWR8 484 aaPredicted RBP14.3□□□□□ -0.12
SYNE3-204ENST00000555759 ANK1P16157 1881 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 TMEM8BA6NDV4 472 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 LY6EQ16553 131 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 SPAARA0A1B0GVQ0 90 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 PRSS46E5RG02 174 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 CITED1Q99966 193 aa14.3□□□□□ -0.12
SYNE3-204ENST00000555759 LSM4Q9Y4Z0 139 aaKnown RBP14.3□□□□□ -0.12
SYNE3-204ENST00000555759 CFAP161Q6P656 301 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 C20orf204Q6ZNR8 217 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 PIMREGQ9BSJ6 248 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 TDRD6O60522 2096 aaKnown RBP14.29□□□□□ -0.12
SYNE3-204ENST00000555759 FAM27E3Q08E93 113 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 CD177Q8N6Q3 437 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 CSTL1Q9H114 145 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 SPACA3Q8IXA5 215 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 ABHD17AQ96GS6 310 aa14.29□□□□□ -0.12
SYNE3-204ENST00000555759 IL18BPO95998 194 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 TMEM86BQ8N661 226 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 IGHV3-64A0A075B6Q5 118 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 H0YJW9 148 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 MYOD1P15172 320 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 SIGLEC15Q6ZMC9 328 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 C9orf106Q8NAJ2 232 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 ZNF114Q8NC26 417 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 IGHV1-18A0A0C4DH31 117 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 VGLL1Q99990 258 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 RALGAPA1Q6GYQ0 2036 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 HIST1H4AP62805 103 aaKnown RBP14.28□□□□□ -0.12
SYNE3-204ENST00000555759 BSPH1Q075Z2 132 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 BOD1L2Q8IYS8 172 aa14.28□□□□□ -0.12
SYNE3-204ENST00000555759 CACNA1DQ01668 2161 aa14.27□□□□□ -0.12
SYNE3-204ENST00000555759 CRPP02741 224 aa14.27□□□□□ -0.12
SYNE3-204ENST00000555759 OR11H6Q8NGC7 330 aa14.27□□□□□ -0.12
SYNE3-204ENST00000555759 WIPF2Q8TF74 440 aaPredicted RBP14.27□□□□□ -0.12
SYNE3-204ENST00000555759 SMKR1H3BMG3 65 aa14.27□□□□□ -0.12
SYNE3-204ENST00000555759 KLF5Q13887 457 aaPredicted RBP14.27□□□□□ -0.12
SYNE3-204ENST00000555759 Q8N8P6 123 aa14.27□□□□□ -0.12
SYNE3-204ENST00000555759 CEND1Q8N111 149 aa14.27□□□□□ -0.13
SYNE3-204ENST00000555759 IGKV3D-20A0A0C4DH25 116 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 CEACAM8P31997 349 aaPredicted RBP14.26□□□□□ -0.13
SYNE3-204ENST00000555759 C9orf139Q6ZV77 190 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 LHFPL4Q7Z7J7 247 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 MYMXA0A1B0GTQ4 84 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 LINC00477Q96M19 166 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 LINC01587Q99440 93 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.26□□□□□ -0.13
SYNE3-204ENST00000555759 INAFM2P0DMQ5 153 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 HAPLN4Q86UW8 402 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 SRSF8Q9BRL6 282 aaKnown RBP14.26□□□□□ -0.13
SYNE3-204ENST00000555759 TRAV8-3A0A0A6YYJ7 113 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 TIMM23O14925 209 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 ZNF688P0C7X2 276 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 C1orf122Q6ZSJ8 110 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 ZCCHC24Q8N2G6 241 aaKnown RBP14.26□□□□□ -0.13
SYNE3-204ENST00000555759 FDCSPQ8NFU4 85 aa14.26□□□□□ -0.13
SYNE3-204ENST00000555759 ATP1A1-AS1Q5TC04 95 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 SHANK2-AS3Q9BTD1 123 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 UCNP55089 124 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 CENPVQ7Z7K6 275 aaPredicted RBP14.25□□□□□ -0.13
SYNE3-204ENST00000555759 CRIPAKQ8N1N5 446 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 RASL10AQ92737 203 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 TMEM14BQ9NUH8 114 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 PLAURQ03405 335 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 RCHY1Q96PM5 261 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 IGHV1-46P01743 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE12JA6NER3 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE7O76087 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE12FP0CL80 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE12GP0CL81 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE12IP0CL82 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE4Q13068 117 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 GLMPQ8WWB7 406 aa14.25□□□□□ -0.13
SYNE3-204ENST00000555759 SNRNP200O75643 2136 aaKnown RBP14.24□□□□□ -0.13
SYNE3-204ENST00000555759 CFHR2P36980 270 aa14.24□□□□□ -0.13
SYNE3-204ENST00000555759 FOXG1P55316 489 aaPredicted RBP14.24□□□□□ -0.13
SYNE3-204ENST00000555759 PAX8Q06710 450 aa14.24□□□□□ -0.13
SYNE3-204ENST00000555759 IGKV1-39P01597 117 aa14.24□□□□□ -0.13
SYNE3-204ENST00000555759 IGKV1D-39P04432 117 aa14.24□□□□□ -0.13
SYNE3-204ENST00000555759 DNAJC30Q96LL9 226 aa14.24□□□□□ -0.13
SYNE3-204ENST00000555759 C1QTNF4Q9BXJ3 329 aa14.24□□□□□ -0.13
SYNE3-204ENST00000555759 C9orf172C9J069 976 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 METRNQ9UJH8 293 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE5Q13069 117 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 GAGE6Q13070 117 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 UNQ6494/PRO21346Q6UXR6 183 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 TIMM21Q9BVV7 248 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 E9PLN8 166 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 ZNF883P0CG24 379 aa14.23□□□□□ -0.13
SYNE3-204ENST00000555759 ARTNQ5T4W7 220 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 Q8TAT8 98 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 CSRP1P21291 193 aaKnown RBP14.22□□□□□ -0.13
SYNE3-204ENST00000555759 TMEM141Q96I45 108 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 CASP8AP2Q9UKL3 1982 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 LRRK1Q38SD2 2015 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 ETV2O00321 342 aaPredicted RBP14.22□□□□□ -0.13
SYNE3-204ENST00000555759 IGHV1-8P0DP01 117 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 RNASE8Q8TDE3 154 aaKnown RBP14.22□□□□□ -0.13
SYNE3-204ENST00000555759 ZNF876PQ49A33 203 aa14.22□□□□□ -0.13
SYNE3-204ENST00000555759 COLCA1Q6ZS62 124 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms