RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FAM106CPP0CH98 169 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 FAM106AQ4KMX7 169 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 OR4X2Q8NGF9 303 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 KLF12Q9Y4X4 402 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 DCHS1Q96JQ0 3298 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 TEX48A0A1B0GUV7 120 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 TMEM238LA0A1B0GVL6 79 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 CT45A10P0DMU9 189 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 SLC25A48Q6ZT89 311 aaKnown RBP10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 PCP2Q8IVA1 136 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 RPRMLQ8N4K4 120 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 C18orf15Q96N68 181 aa10.31□□□□□ -0.76
SFSWAP-209ENST00000540469 D6R8Y8 96 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 TMEM178AQ8NBL3 297 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 DSCAMO60469 2012 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 IGHV1-18A0A0C4DH31 117 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 J3QR89 54 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 NDUFS8O00217 210 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 LOXL1Q08397 574 aaPredicted RBP10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 CR1LQ2VPA4 569 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 ZNF788Q6ZQV5 615 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 MTURNQ8N3F0 131 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 PRELID3AQ96N28 172 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 SIGMAR1Q99720 223 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 RNF7Q9UBF6 113 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 RPUSD1Q9UJJ7 312 aaKnown RBP10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 IGKV1D-37A0A075B6S9 117 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 K7EQM0 130 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 MYCNOSP40205 109 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 ATP1A1-AS1Q5TC04 95 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 UBALD2Q8IYN6 164 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 HIGD1AQ9Y241 93 aa10.3□□□□□ -0.76
SFSWAP-209ENST00000540469 TRAV26-1A0A087WT03 109 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 TIMM23BQ5SRD1 257 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 C1orf210Q8IVY1 113 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 OR4C13Q8NGP0 309 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 IGHV3-72A0A0B4J1Y9 119 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 PSG3Q16557 428 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 VMA21Q3ZAQ7 101 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 MBNL2Q5VZF2 373 aaKnown RBP10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 BOD1L2Q8IYS8 172 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 FER1L6-AS2Q96M78 137 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 LAMA5O15230 3695 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 DSPP15924 2871 aaKnown RBP10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 RBP4P02753 201 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 CGB3P0DN86 165 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 CGB7P0DN87 165 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 RAB9AP51151 201 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 TNFAIP6P98066 277 aaPredicted RBP10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 NEGR1Q7Z3B1 354 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 IFI27L1Q96BM0 104 aa10.29□□□□□ -0.76
SFSWAP-209ENST00000540469 A0A1B0GV72 72 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 C9orf172C9J069 976 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 K7EMI3 77 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 FGF6P10767 208 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 BCL6BQ8N143 479 aaPredicted RBP10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 HBDP02042 147 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 CCL3L1P16619 93 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 TNFRSF1AP19438 455 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 Q71RC1 249 aaPredicted RBP10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 SIGLEC8Q9NYZ4 499 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 A0A1W2PRD5 423 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 A0A1W2PRF3 423 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 A0A1W2PRM7 423 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 FCER1GP30273 86 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 ZCCHC24Q8N2G6 241 aaKnown RBP10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 OTORQ9NRC9 128 aa10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 NHP2Q9NX24 153 aaKnown RBP10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 TSSC4Q9Y5U2 329 aaPredicted RBP10.28□□□□□ -0.76
SFSWAP-209ENST00000540469 PKDREJQ9NTG1 2253 aa10.27□□□□□ -0.76
SFSWAP-209ENST00000540469 K7ERJ3 54 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 PRSS1P07477 247 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 FCGR2BP31994 310 aaPredicted RBP10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 ADAMTSL5Q6ZMM2 481 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 AMN1Q8IY45 258 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 MDS2Q8NDY4 140 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 PPIAL4EA0A075B759 164 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 SMIM17P0DL12 118 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 PPIAL4FP0DN26 164 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 CKS2P33552 79 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 SCGB2A2Q13296 93 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 LGALS9BQ3B8N2 356 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 OTOGLQ3ZCN5 2332 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 LGALS9CQ6DKI2 356 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 ORMDL3Q8N138 153 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 THAP8Q8NA92 274 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 C9orf106Q8NAJ2 232 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 FAM222BQ8WU58 562 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 PROCRQ9UNN8 238 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 A0A1W2PPI3 338 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 MSMPQ1L6U9 139 aa10.27□□□□□ -0.77
SFSWAP-209ENST00000540469 LOC400499M0QZD8 3231 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 TMEM213A2RRL7 107 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 GP9P14770 177 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 KIR2DL2P43627 348 aaPredicted RBP10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 TMEM167AQ8TBQ9 72 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 ARRDC1-AS1Q9H2J1 176 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 TPSG1Q9NRR2 321 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 SMKR1H3BMG3 65 aa10.26□□□□□ -0.77
SFSWAP-209ENST00000540469 C19orf67A6NJJ6 358 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms