RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 I3L2K1 104 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 ZNF207O43670 478 aaKnown RBP13.36□□□□□ -0.27
USP28-208ENST00000540438 GP9P14770 177 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 HLA-DMBP28068 263 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 SELENOTP62341 195 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 Q56UQ5 140 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 SIGLECL1Q8N7X8 197 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 TMEM116Q8NCL8 245 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 ABCA2Q9BZC7 2435 aa13.36□□□□□ -0.27
USP28-208ENST00000540438 NBR2O15453 112 aa13.35□□□□□ -0.27
USP28-208ENST00000540438 RNASEKQ6P5S7 137 aaKnown RBP13.35□□□□□ -0.27
USP28-208ENST00000540438 TMEM219Q86XT9 240 aa13.35□□□□□ -0.27
USP28-208ENST00000540438 NOTCH3Q9UM47 2321 aa13.35□□□□□ -0.27
USP28-208ENST00000540438 GNG7O60262 68 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 CRYGCP07315 174 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 TPPP2P59282 170 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 A0A1W2PS18 150 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 GTSF1Q8WW33 167 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 C19orf24Q9BVV8 132 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 TCRAP04437 139 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 GNLYP22749 145 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 ETFRF1Q6IPR1 90 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 C8orf46Q8TAG6 207 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 TMUB1Q9BVT8 246 aa13.34□□□□□ -0.27
USP28-208ENST00000540438 SMIM27A0A1W2PRY6 76 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 LY6LH3BQJ8 138 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 TRGV9Q99603 122 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 CLEC5AQ9NY25 188 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 NDUFB8O95169 186 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 REC114Q7Z4M0 266 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 BEND2Q8NDZ0 799 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 BPESC1Q9GZL8 116 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 NRN1Q9NPD7 142 aa13.33□□□□□ -0.28
USP28-208ENST00000540438 PAX1P15863 534 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 TCTAP57738 103 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 G3V318 75 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 TMEM11P17152 192 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 G0S2P27469 103 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 COL8A1P27658 744 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 Q8TAT8 98 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 CFHR4Q92496 578 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 DAZAP1Q96EP5 407 aaKnown RBP13.32□□□□□ -0.28
USP28-208ENST00000540438 GNB1LQ9BYB4 327 aa13.32□□□□□ -0.28
USP28-208ENST00000540438 IZUMO1RA6ND01 250 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 P01737 135 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 BRD3OSQ6XYD6 125 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 C8orf49Q96NF6 230 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 FXYD7P58549 80 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 FAM71F2Q6NXP2 309 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 GPR82Q96P67 336 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 GPX1P07203 203 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 CHRDL1Q9BU40 450 aa13.31□□□□□ -0.28
USP28-208ENST00000540438 BRS3P32247 399 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 MYCNOSP40205 109 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 ATP5IP56385 69 aaPredicted RBP13.3□□□□□ -0.28
USP28-208ENST00000540438 C5orf64Q2M2E5 130 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 LINC00173Q6ZV60 143 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 C8orf31Q8N9H6 132 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 NRGNQ92686 78 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 RNF125Q96EQ8 232 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 PMCHL2Q9BQD1 86 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 MXRA5Q9NR99 2828 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 IGKV2-40A0A087WW87 121 aaPredicted RBP13.3□□□□□ -0.28
USP28-208ENST00000540438 DIRC3C9JPN6 131 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 IGKV2D-40P01614 121 aaPredicted RBP13.3□□□□□ -0.28
USP28-208ENST00000540438 TAS2R60P59551 318 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 ZNF491Q8N8L2 437 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 C18orf32Q8TCD1 76 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 TSKUQ8WUA8 353 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 TNFRSF14Q92956 283 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 MBD6Q96DN6 1003 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 RNF2Q99496 336 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 ARL2-SNX15V9GYD0 113 aa13.3□□□□□ -0.28
USP28-208ENST00000540438 DOPEY1Q5JWR5 2465 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 ANKRD17O75179 2603 aaKnown RBP13.29□□□□□ -0.28
USP28-208ENST00000540438 TMEM183BQ1AE95 376 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 FANCD2OSQ96PS1 177 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 LY96Q9Y6Y9 160 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 SNHG12Q9BXW3 62 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 C5orf17Q8NAS9 161 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 ARPC1AQ92747 370 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 ZC2HC1AQ96GY0 325 aa13.29□□□□□ -0.28
USP28-208ENST00000540438 INS-IGF2F8WCM5 200 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 TMEM75Q8N9X5 138 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 C7orf69Q9H7B7 122 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 NAV2Q8IVL1 2488 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 GPR183P32249 361 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 C11orf71Q6IPW1 123 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 LY6G5BQ8NDX9 201 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 GRAMD2BQ96HH9 432 aa13.28□□□□□ -0.28
USP28-208ENST00000540438 HSBP1O75506 76 aa13.27□□□□□ -0.28
USP28-208ENST00000540438 C3orf79P0CE67 100 aa13.27□□□□□ -0.28
USP28-208ENST00000540438 HIST1H1EP10412 219 aaKnown RBP13.27□□□□□ -0.28
USP28-208ENST00000540438 CHODLQ9H9P2 273 aa13.27□□□□□ -0.28
USP28-208ENST00000540438 ZNF785A8K8V0 405 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 PRTN3P24158 256 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 TFPI2P48307 235 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 SSX8Q7RTT4 187 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 NDUFAF3Q9BU61 184 aa13.27□□□□□ -0.29
USP28-208ENST00000540438 RPP21Q9H633 154 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms