RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 XCL2Q9UBD3 114 aa10.73□□□□□ -0.69
USP28-204ENST00000537642 X6R8D5 127 aa10.73□□□□□ -0.69
USP28-204ENST00000537642 IGHV4-28A0A0C4DH34 117 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 AGPAT2O15120 278 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 CST7O76096 145 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 IGKV3-20P01619 116 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 OR5G3P0C626 314 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 RBMY1A1P0DJD3 496 aaKnown RBP10.72□□□□□ -0.69
USP28-204ENST00000537642 RBMY1CP0DJD4 496 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 CAV2P51636 162 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 NANOS2P60321 138 aaKnown RBP10.72□□□□□ -0.69
USP28-204ENST00000537642 S100A10P60903 97 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 NUTF2P61970 127 aaKnown RBP10.72□□□□□ -0.69
USP28-204ENST00000537642 RAB32Q13637 225 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 RBMY1FQ15415 496 aaKnown RBP10.72□□□□□ -0.69
USP28-204ENST00000537642 PATE2Q6UY27 113 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 NRARPQ7Z6K4 114 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 C11orf45Q8TAV5 145 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 PHLDA1Q8WV24 401 aaPredicted RBP10.72□□□□□ -0.69
USP28-204ENST00000537642 UHRF2Q96PU4 802 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 ARL6Q9H0F7 186 aa10.72□□□□□ -0.69
USP28-204ENST00000537642 F6UB75 175 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 MIFP14174 115 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 PVALBP20472 110 aaPredicted RBP10.71□□□□□ -0.69
USP28-204ENST00000537642 ZNF546Q86UE3 836 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 CLUHP3Q96NS8 147 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 MGST2Q99735 147 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 C1QTNF4Q9BXJ3 329 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 GPN1Q9HCN4 374 aaPredicted RBP10.71□□□□□ -0.69
USP28-204ENST00000537642 BATF3Q9NR55 127 aa10.71□□□□□ -0.69
USP28-204ENST00000537642 TRAV8-2A0A0B4J237 113 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 A0A0J9YX75 114 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 IGSF23A1L1A6 192 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 GOSR2O14653 212 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 SIX6O95475 246 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 RPL7P18124 248 aaKnown RBP10.7□□□□□ -0.7
USP28-204ENST00000537642 FXYD7P58549 80 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 SPATA31B1PQ5VZV4 182 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 IGFL4Q6B9Z1 124 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 ZNF709Q8N972 641 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 OR4B1Q8NGF8 309 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 MFFQ9GZY8 342 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 ARV1Q9H2C2 271 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 RPRMQ9NS64 109 aa10.7□□□□□ -0.7
USP28-204ENST00000537642 LYRM2Q9NU23 88 aaPredicted RBP10.7□□□□□ -0.7
USP28-204ENST00000537642 INMT-MINDY4F8WBC2 141 aa10.69□□□□□ -0.7
USP28-204ENST00000537642 PXDC1Q5TGL8 231 aa10.69□□□□□ -0.7
USP28-204ENST00000537642 FAM78BQ5VT40 261 aa10.69□□□□□ -0.7
USP28-204ENST00000537642 EBLN2Q6P2I7 272 aa10.69□□□□□ -0.7
USP28-204ENST00000537642 TMEM252Q8N6L7 170 aa10.69□□□□□ -0.7
USP28-204ENST00000537642 KLK5Q9Y337 293 aaPredicted RBP10.69□□□□□ -0.7
USP28-204ENST00000537642 KMT2AQ03164 3969 aa10.69□□□□□ -0.7
USP28-204ENST00000537642 ELOA3CA0A087WX78 387 aaPredicted RBP10.68□□□□□ -0.7
USP28-204ENST00000537642 A0A087X0K7 114 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 MRPS12O15235 138 aaKnown RBP10.68□□□□□ -0.7
USP28-204ENST00000537642 PRAF2O60831 178 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 SULT1A1P50225 295 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 FGL1Q08830 312 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 VWC2Q2TAL6 325 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 S100A7AQ86SG5 101 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 RNF182Q8N6D2 247 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 TMEM37Q8WXS4 190 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 MARVELD1Q9BSK0 173 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 SLC35B3Q9H1N7 401 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 HRH4Q9H3N8 390 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 UQCC1Q9NVA1 299 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 WDR83OSQ9Y284 106 aa10.68□□□□□ -0.7
USP28-204ENST00000537642 A8MTW9 85 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 S100A11P31949 105 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 CAMLGP49069 296 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 PSG9Q00887 426 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 ZNF705AQ6ZN79 300 aaPredicted RBP10.67□□□□□ -0.7
USP28-204ENST00000537642 LINC00305Q7Z4B0 112 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 STX12Q86Y82 276 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 LINC00476Q8WZB0 136 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 NMES1Q9C002 83 aa10.67□□□□□ -0.7
USP28-204ENST00000537642 VPS13DQ5THJ4 4388 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 UBE2L5PA0A1B0GUS4 154 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 ZNF705FA8MVS1 300 aaPredicted RBP10.66□□□□□ -0.7
USP28-204ENST00000537642 COX7A2P2O60397 106 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 ZNF705DP0CH99 300 aaPredicted RBP10.66□□□□□ -0.7
USP28-204ENST00000537642 ZNF705BP0CI00 300 aaPredicted RBP10.66□□□□□ -0.7
USP28-204ENST00000537642 HLA-DMBP28068 263 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 DEFA1P59665 94 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 DEFA3P59666 94 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 PRR20EP86478 221 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 PRR20CP86479 221 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 PRR20DP86480 221 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 PRR20BP86481 221 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 PRR20AP86496 221 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 RAB31Q13636 194 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 MORN5Q5VZ52 161 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 MIC13Q5XKP0 118 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 AMTNQ6UX39 209 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 RNF24Q9Y225 148 aa10.66□□□□□ -0.7
USP28-204ENST00000537642 H0YIZ8 118 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 CNN1P51911 297 aaKnown RBP10.65□□□□□ -0.7
USP28-204ENST00000537642 HBG1P69891 147 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 HBG2P69892 147 aa10.65□□□□□ -0.7
USP28-204ENST00000537642 BAXQ07812 192 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms