RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 C2orf70A6NJV1 201 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 TMEM238C9JI98 176 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 TCL1BO95988 128 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 PIGPP57054 158 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 BPIFA4PQ86YQ2 179 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 EXOC3-AS1Q8N2X6 119 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 OR5A1Q8NGJ0 315 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 OR4C6Q8NH72 309 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 BTF3L4Q96K17 158 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 C9orf16Q9BUW7 83 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 TMEM126AQ9H061 195 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 SLC39A9Q9NUM3 307 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 EPDR1Q9UM22 224 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 NUP210Q8TEM1 1887 aaPredicted RBP0.71□□□□□ -2.3
CD44-215ENST00000525241 SIP14410 1827 aa0.71□□□□□ -2.3
CD44-215ENST00000525241 KDM5CP41229 1560 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 FRMPD1Q5SYB0 1578 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 NISCHQ9Y2I1 1504 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 ITPR2Q14571 2701 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 PIK3C2AO00443 1686 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 PBRM1Q86U86 1689 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 A0A0D9SG52 128 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 LYZL6O75951 148 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 OR5F1O95221 314 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 OR4E1P0C645 316 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 ASAH2BP0C7U1 165 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 SMIM17P0DL12 118 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 SPI1P17947 270 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 DEFA3P59666 94 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 YPEL3P61236 119 aaPredicted RBP0.7□□□□□ -2.3
CD44-215ENST00000525241 TMED2Q15363 201 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 RHEBQ15382 184 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 TSNQ15631 228 aaKnown RBP0.7□□□□□ -2.3
CD44-215ENST00000525241 AAED1Q7RTV5 226 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 OR13D1Q8NGV5 346 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 OR10J5Q8NHC4 309 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 GNPDA2Q8TDQ7 276 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 PRRT1Q99946 306 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 KIFC1Q9BW19 673 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 CCDC90BQ9GZT6 254 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 OSTCQ9NRP0 149 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 HS3ST2Q9Y278 367 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 FAM32AQ9Y421 112 aaKnown RBP0.7□□□□□ -2.3
CD44-215ENST00000525241 MUC4Q99102 2169 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 SYNMO15061 1565 aa0.7□□□□□ -2.3
CD44-215ENST00000525241 ACANP16112 2415 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 ASCC3Q8N3C0 2202 aaKnown RBP0.69□□□□□ -2.3
CD44-215ENST00000525241 ZFC3H1O60293 1989 aaKnown RBP0.69□□□□□ -2.3
CD44-215ENST00000525241 A0A087X0T9 212 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 CLDN25C9JDP6 229 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 J3QRK9 145 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 M0R378 163 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 CASP1P29466 404 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 ERP29P30040 261 aaKnown RBP0.69□□□□□ -2.3
CD44-215ENST00000525241 MRPS25P82663 173 aaKnown RBP0.69□□□□□ -2.3
CD44-215ENST00000525241 KRR1Q13601 381 aaKnown RBP0.69□□□□□ -2.3
CD44-215ENST00000525241 RRN3P1Q2M238 152 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 KHDC3LQ587J8 217 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 HACD4Q5VWC8 232 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 Q8IYB0 196 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 WFDC11Q8NEX6 87 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 OR8D4Q8NGM9 314 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 STAG3L4Q8TBR4 150 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 SLC50A1Q9BRV3 221 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 ENY2Q9NPA8 101 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 OPTCQ9UBM4 332 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 PRNDQ9UKY0 176 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 VPS13AQ96RL7 3174 aa0.69□□□□□ -2.3
CD44-215ENST00000525241 XIRP1Q702N8 1843 aaKnown RBP0.68□□□□□ -2.3
CD44-215ENST00000525241 NCAPD3P42695 1498 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 TRAV1-1A0A0B4J248 108 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 BAALC-AS2P0C853 105 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 S100A5P33763 92 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 PPP1R2P41236 205 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 SSR2P43308 183 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 COL7A1Q02388 2944 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 SPA17Q15506 151 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 DEFB113Q30KQ7 82 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 PPP1R2P3Q6NXS1 205 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 CD109Q6YHK3 1445 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 TRAPPC6BQ86SZ2 158 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 DNAJC9Q8WXX5 260 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 HIST1H2BLQ99880 126 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 GINS3Q9BRX5 216 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 CCDC94Q9BW85 323 aaPredicted RBP0.68□□□□□ -2.3
CD44-215ENST00000525241 TAS2R4Q9NYW5 299 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 FRYLO94915 3013 aa0.68□□□□□ -2.3
CD44-215ENST00000525241 PHRF1Q9P1Y6 1649 aaKnown RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 FRYQ5TBA9 3013 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 ARAP1Q96P48 1450 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 XIRP2A4UGR9 3374 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 SNRNP200O75643 2136 aaKnown RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 ZGRF1Q86YA3 2104 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 A0A087WX48 190 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 TRAV12-1A0A0B4J245 112 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 FUOMA2VDF0 154 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 B4DSR2 109 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 CYB5BO43169 146 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 MFSD11O43934 449 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 OR1I1O60431 355 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms