RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 BCL6BQ8N143 479 aaPredicted RBP9.58□□□□□ -0.88
HDAC6-230ENST00000488543 CMTM2Q8TAZ6 248 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 LINC00479Q96M42 142 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 NDUFAF3Q9BU61 184 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 CUBNO60494 3623 aa9.58□□□□□ -0.88
HDAC6-230ENST00000488543 GGTLC3B5MD39 225 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 BRS3P32247 399 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 ETFRF1Q6IPR1 90 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 WNT10AQ9GZT5 417 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 PPP1R14DQ9NXH3 145 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 NAGKQ9UJ70 344 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 IGHV3-21A0A0B4J1V1 117 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 TCRBV4S1A1TA0A5B7 111 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 SNURFLB1AK76 121 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 I3L2K1 104 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 CORTO00230 105 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 MT-CO2P00403 227 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 RAB4BP61018 213 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 CYB5R2Q6BCY4 276 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 ARPC1AQ92747 370 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 IL36BQ9NZH7 164 aa9.57□□□□□ -0.88
HDAC6-230ENST00000488543 IGHV7-81A0A0B4J1V7 117 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 OR5G3P0C626 314 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 MGST1P10620 155 aaKnown RBP9.56□□□□□ -0.88
HDAC6-230ENST00000488543 EGR2P11161 476 aaPredicted RBP9.56□□□□□ -0.88
HDAC6-230ENST00000488543 IQCJQ1A5X6 159 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 TOMM20LQ6UXN7 152 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 TMEM116Q8NCL8 245 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 PIFOQ8TCI5 191 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 UHRF2Q96PU4 802 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 SNHG12Q9BXW3 62 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 V9GYV3 84 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 PRB4P10163 310 aaPredicted RBP9.56□□□□□ -0.88
HDAC6-230ENST00000488543 GNG4P50150 75 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 TAS2R60P59551 318 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 SUMO1P63165 101 aaKnown RBP9.56□□□□□ -0.88
HDAC6-230ENST00000488543 MRPL54Q6P161 138 aaKnown RBP9.56□□□□□ -0.88
HDAC6-230ENST00000488543 TMEM219Q86XT9 240 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 NOL4LQ96MY1 436 aaPredicted RBP9.56□□□□□ -0.88
HDAC6-230ENST00000488543 HSPB9Q9BQS6 159 aa9.56□□□□□ -0.88
HDAC6-230ENST00000488543 HELTA6NFD8 242 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 K7EIM0 57 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 HLA-DRB1P01911 266 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 PYYP10082 97 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 CRISP2P16562 243 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 RPEL1Q2QD12 228 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 IL17RELQ6ZVW7 336 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 SGK494Q96LW2 274 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 TRGV9Q99603 122 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 C1RLQ9NZP8 487 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 SH2D7A6NKC9 451 aaPredicted RBP9.55□□□□□ -0.88
HDAC6-230ENST00000488543 NPIPB5A8MRT5 1133 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 G0S2P27469 103 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 YPEL3P61236 119 aaPredicted RBP9.55□□□□□ -0.88
HDAC6-230ENST00000488543 BAGE3Q86Y29 109 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 BAGE2Q86Y30 109 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 MEGF9Q9H1U4 602 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 SERTAD4Q9NUC0 356 aa9.55□□□□□ -0.88
HDAC6-230ENST00000488543 BAHCC1Q9P281 2608 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 TRAV34A0A0B4J273 112 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 J3QLI3 93 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 PATE2Q6UY27 113 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 TTC9CQ8N5M4 171 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 VN1R17PQ8TDU5 208 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 C11orf52Q96A22 123 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 RCHY1Q96PM5 261 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 FANCD2OSQ96PS1 177 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 GSX1Q9H4S2 264 aaPredicted RBP9.54□□□□□ -0.88
HDAC6-230ENST00000488543 TNFRSF19Q9NS68 423 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 PAM16Q9Y3D7 125 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 SETXQ7Z333 2677 aaKnown RBP9.54□□□□□ -0.88
HDAC6-230ENST00000488543 SELENOTP62341 195 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 LY6EQ16553 131 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 C2orf88Q9BSF0 95 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 C19orf24Q9BVV8 132 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 GNB4Q9HAV0 340 aa9.54□□□□□ -0.88
HDAC6-230ENST00000488543 IGLV11-55A0A075B6I3 123 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 DEFB112Q30KQ8 113 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 SMR3AQ99954 134 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 NAT8BQ9UHF3 227 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 MTORP42345 2549 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 IGLV2-8P01709 118 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 IGLC1P0CG04 106 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 KRTAP1-1Q07627 177 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 ZNF705AQ6ZN79 300 aaPredicted RBP9.53□□□□□ -0.88
HDAC6-230ENST00000488543 C5orf56Q8N8D9 126 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 FAM167A-AS1Q96KT0 104 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 RASL11BQ9BPW5 248 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 DNAJC4Q9NNZ3 241 aa9.53□□□□□ -0.88
HDAC6-230ENST00000488543 A4D1N5 150 aa9.52□□□□□ -0.89
HDAC6-230ENST00000488543 H3BTX0 84 aa9.52□□□□□ -0.89
HDAC6-230ENST00000488543 H3BUX3 64 aa9.52□□□□□ -0.89
HDAC6-230ENST00000488543 BTF3L4Q96K17 158 aa9.52□□□□□ -0.89
HDAC6-230ENST00000488543 MRPL32Q9BYC8 188 aaKnown RBP9.52□□□□□ -0.89
HDAC6-230ENST00000488543 SAMD10Q9BYL1 202 aa9.52□□□□□ -0.89
HDAC6-230ENST00000488543 TECRQ9NZ01 308 aaKnown RBP9.52□□□□□ -0.89
HDAC6-230ENST00000488543 FBXL7Q9UJT9 491 aa9.52□□□□□ -0.89
HDAC6-230ENST00000488543 C9JCJ5 164 aa9.51□□□□□ -0.89
HDAC6-230ENST00000488543 PMCHP20382 165 aa9.51□□□□□ -0.89
HDAC6-230ENST00000488543 KRTDAPP60985 99 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms