RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 C16orf47Q6ZP98 133 aaPredicted RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 SMIM27A0A1W2PRY6 76 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 BRK1Q8WUW1 75 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 PRADC1Q9BSG0 188 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 CD3EP07766 207 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 SCNM1Q9BWG6 230 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM236DA0A1B0GTK5 79 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 DLL1O00548 723 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 CXCL13O43927 109 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FAM236CP0DP71 79 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 FHL1Q13642 323 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MOB3BQ86TA1 216 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV4-34P06331 123 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MRPL32Q9BYC8 188 aaKnown RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 ZC2HC1BQ5TFG8 222 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV1-5P01602 117 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 DRD3P35462 400 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 LYZL4Q96KX0 146 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MBD3L4A6NDZ8 208 aaPredicted RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MBD3L3A6NE82 208 aaPredicted RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 MBD3L5A6NJ08 208 aaPredicted RBP2.79□□□□□ -1.96
SYNE1-212ENST00000423061 ANKRD29Q8N6D5 301 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 PRDM6Q9NQX0 595 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 CECR9P0C854 216 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 CD7P09564 240 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 TEN1Q86WV5 123 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 TCF19Q9Y242 345 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 C2CD3Q4AC94 2353 aa2.79□□□□□ -1.96
SYNE1-212ENST00000423061 A0A1B0GUT8 65 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 COL6A6A6NMZ7 2263 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 H3BMM0 161 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 IL17DQ8TAD2 202 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 A0A0G2JRQ6 117 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 UPK2O00526 184 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 ASIPP42127 132 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 LINC00205P59089 165 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 SPTY2D1-AS1A0A0U1RR47 76 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 PGPA6NDG6 321 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 IGKCP01834 107 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 SHISA5Q8N114 240 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 ABCA4P78363 2273 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 JPT2Q9H910 190 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 CALYQ9NYX4 217 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 TNFSF14O43557 240 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 NFE4Q86UQ8 179 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 OR9G1Q8NH87 305 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 LINC01545Q5VT33 79 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 NTN5Q8WTR8 489 aaPredicted RBP2.78□□□□□ -1.96
SYNE1-212ENST00000423061 PILRAQ9UKJ1 303 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 CXorf67Q86X51 503 aaPredicted RBP2.78□□□□□ -1.96
SYNE1-212ENST00000423061 IGHV3-21A0A0B4J1V1 117 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 NPIPB13A6NJU9 1138 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 NPIPB4C9JG80 1138 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 WIPF1O43516 503 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 NHLRC4P0CG21 123 aaPredicted RBP2.78□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV3D-7A0A0C4DH55 119 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 CXXC4Q9H2H0 198 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 ATXN8Q156A1 80 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 IFI27L2Q9H2X8 130 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 BAALCQ8WXS3 180 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 COQ2Q96H96 371 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.78□□□□□ -1.968e-9■■■□□ 18.3
SYNE1-212ENST00000423061 IGKV1-8A0A0C4DH67 115 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 A0A1W2PR77 199 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 PRB1P04280 392 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 C1orf195Q5TG92 126 aa2.78□□□□□ -1.96
SYNE1-212ENST00000423061 NUP210LQ5VU65 1888 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 RBP4P02753 201 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF815PA8K554 130 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 CXCL10P02778 98 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 C8orf88P0DMB2 117 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF503Q96F45 646 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 TINCRA0A1B0GVN0 87 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 DRAM1Q8N682 238 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM74BQ9NUR3 256 aa2.78□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV3-43A0A0B4J1X8 118 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 IGHV3-43DP0DP04 118 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 MORN5Q5VZ52 161 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 S100A4P26447 101 aaKnown RBP2.77□□□□□ -1.97
SYNE1-212ENST00000423061 DSCR8Q96T75 97 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 ANAPC10Q9UM13 185 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TEX49A0A1B0GTD5 131 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 UTF1Q5T230 341 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 MGST2Q99735 147 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 C2CD4DB7Z1M9 353 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 H7C1H1 209 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 NGFP01138 241 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM170BQ5T4T1 132 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TRBV20OR9-2A0A075B6H5 130 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 DLX1P56177 255 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 RPRMLQ8N4K4 120 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 NFAM1Q8NET5 270 aaPredicted RBP2.77□□□□□ -1.97
SYNE1-212ENST00000423061 LOXL2Q9Y4K0 774 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 TMEM131Q92545 1883 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 A0A1B0GX51 115 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 MGST3O14880 152 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 SLC25A20O43772 301 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 FHL5Q5TD97 284 aa2.77□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF658BQ4V348 819 aaPredicted RBP2.77□□□□□ -1.97
SYNE1-212ENST00000423061 ZNF645Q8N7E2 425 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms