RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 RTBDNQ9BSG5 229 aaPredicted RBP5.88□□□□□ -1.47
UPF2-203ENST00000397053 SIGLEC9Q9Y336 463 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 PAX9P55771 341 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 FGFBP3Q8TAT2 258 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 TMEM190Q8WZ59 177 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 H3BMM0 161 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 IGFBP3P17936 291 aaPredicted RBP5.88□□□□□ -1.47
UPF2-203ENST00000397053 PFN2P35080 140 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 UBE2WQ96B02 151 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 TRGV9Q99603 122 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 SPXQ9BT56 116 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 TIMM21Q9BVV7 248 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 TRAV25A0A0B4J276 109 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 IGHV1-69DA0A0B4J2H0 117 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 IGHV1-69P01742 117 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 LMO1P25800 156 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 SPINK13Q1W4C9 94 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 Q5BKY6 102 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 IGFL4Q6B9Z1 124 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 LYZL1Q6UWQ5 148 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 OCC1Q8TAD7 63 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 MESP1Q9BRJ9 268 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 SMIM2Q9BVW6 85 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 A0A1B0GUL6 1792 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 DYSFO75923 2080 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 IGKV1-9A0A0C4DH69 117 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 FREM3P0C091 2139 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 UBE2E1P51965 193 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 TMEM256Q8N2U0 113 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 THAP8Q8NA92 274 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 PLCH1Q4KWH8 1693 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 IGHV3-16A0A0C4DH30 117 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 NXPH4O95158 308 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 PRR30Q53SZ7 412 aaPredicted RBP5.87□□□□□ -1.47
UPF2-203ENST00000397053 TCTEX1D4Q5JR98 221 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 ZNF362Q5T0B9 420 aaPredicted RBP5.87□□□□□ -1.47
UPF2-203ENST00000397053 USP54Q70EL1 1684 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 D6R8Y8 96 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 E7EQL1 145 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 SUPT4H1P63272 117 aaKnown RBP5.87□□□□□ -1.47
UPF2-203ENST00000397053 IFITM3Q01628 133 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 PMVKQ15126 192 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 GAGE2EQ4V326 116 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 GAGE2DQ9UEU5 116 aa5.87□□□□□ -1.47
UPF2-203ENST00000397053 NHSQ6T4R5 1651 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 DKK1O94907 266 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 IGKV1-5P01602 117 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 TREML4Q6UXN2 200 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 C1orf122Q6ZSJ8 110 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 F8P00451 2351 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 HIVEP3Q5T1R4 2406 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 IGKV2D-24A0A075B6R9 120 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 IGKV1OR2-108A0A075B7D4 117 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 ANGP03950 147 aaKnown RBP5.86□□□□□ -1.47
UPF2-203ENST00000397053 GAS1P54826 345 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 ID3Q02535 119 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 C2orf82Q6UX34 121 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 PAQR4Q8N4S7 273 aaPredicted RBP5.86□□□□□ -1.47
UPF2-203ENST00000397053 DOCK8Q8NF50 2099 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 H0YJW9 148 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 AZU1P20160 251 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 MST1P26927 711 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 IFITM2Q01629 132 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 OCIAD2Q56VL3 154 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 REG4Q9BYZ8 158 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 Q9HAA7 133 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 LAMTOR2Q9Y2Q5 125 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 TRAV8-3A0A0A6YYJ7 113 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 J3QLI3 93 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 ARMS2P0C7Q2 107 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 LYPD2Q6UXB3 125 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 CD177Q8N6Q3 437 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 FNDC4Q9H6D8 234 aaPredicted RBP5.86□□□□□ -1.47
UPF2-203ENST00000397053 LRRK1Q38SD2 2015 aa5.86□□□□□ -1.47
UPF2-203ENST00000397053 DICER1Q9UPY3 1922 aaKnown RBP5.86□□□□□ -1.47
UPF2-203ENST00000397053 IL17RELQ6ZVW7 336 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 GGNQ86UU5 652 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 MDS2Q8NDY4 140 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 FBLIM1Q8WUP2 373 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 LYZL4Q96KX0 146 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 GAGE2BQ13066 116 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 SLAQ13239 276 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 TRPT1Q86TN4 253 aaKnown RBP5.85□□□□□ -1.47
UPF2-203ENST00000397053 CHCHD1Q96BP2 118 aaKnown RBP5.85□□□□□ -1.47
UPF2-203ENST00000397053 A0A096LPF7 62 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 PRSS29PA6NIE9 313 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 ATP6V0E1O15342 81 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 GAGE6Q13070 117 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 IGF2BP2-AS1Q96M15 143 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 TMEM243Q9BU79 118 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 ZNF319Q9P2F9 582 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 ZNFX1Q9P2E3 1918 aaKnown RBP5.85□□□□□ -1.47
UPF2-203ENST00000397053 SH2D1AO60880 128 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 GAFA1Q96PS6 74 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 MGST2Q99735 147 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 DMRT1Q9Y5R6 373 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 DOCK6Q96HP0 2047 aa5.85□□□□□ -1.47
UPF2-203ENST00000397053 ZFC3H1O60293 1989 aaKnown RBP5.85□□□□□ -1.47
UPF2-203ENST00000397053 TRAV8-1A0A0A6YYK1 113 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 NDUFS5O43920 106 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms