RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 IGHV3-30-5P0DP03 117 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 SPATA31B1PQ5VZV4 182 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 NOP10Q9NPE3 64 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 ESM1Q9NQ30 184 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 NDUFA4O00483 81 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 PEX7O00628 323 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 PFN1P07737 140 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 VN1R17PQ8TDU5 208 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 WFDC6Q9BQY6 131 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 PRO1933Q9H354 126 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 MRPL16Q9NX20 251 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 LOXP28300 417 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 CDKN1BP46527 198 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 LBHQ53QV2 105 aaPredicted RBP7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 FER1L6-AS1Q8NA97 138 aa7.4□□□□□ -1.22
LIMCH1-202ENST00000381753 IGLV2-18A0A075B6J9 118 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 IGLV3-9A0A075B6K5 115 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 FBXL19-AS1Q494R0 122 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 APRG1Q8IVJ8 170 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 OTORQ9NRC9 128 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 A0A1W2PNU3 283 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 GATA2P23769 480 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 OR4D5Q8NGN0 318 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 GTSF1Q8WW33 167 aa7.4□□□□□ -1.23
LIMCH1-202ENST00000381753 TIRAPP58753 221 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 SUPT4H1P63272 117 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 SERF2P84101 59 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNF79Q15937 498 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 AANATQ16613 207 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNF876PQ49A33 203 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 HIST1H2BAQ96A08 127 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNF503Q96F45 646 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 PLSCR2Q9NRY7 297 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 KLK9Q9UKQ9 250 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 UBE2CO00762 179 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 CRYBB3P26998 211 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNF880Q6PDB4 577 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 NPCDR1Q9BY65 106 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 CHD3Q12873 2000 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 BLCAPP62952 87 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 RPL18AQ02543 176 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 C14orf177Q52M58 125 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 TMEM14DPA8MWL7 114 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 XAF1Q6GPH4 301 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 C8orf49Q96NF6 230 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 FUT9Q9Y231 359 aa7.39□□□□□ -1.23
LIMCH1-202ENST00000381753 DUTP33316 252 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 SH2D6Q7Z4S9 175 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 F11RQ9Y624 299 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 TMEM50AO95807 157 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 MT-ND6P03923 174 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 VAX1Q5SQQ9 334 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 COL5A1-AS1Q5SY13 56 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 C7orf33Q8WU49 177 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 ALX4Q9H161 411 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 CCDC88CQ9P219 2028 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 TRBV5-5A0A0J9YX44 114 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 NUPR2A6NF83 97 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 CTDSPLO15194 276 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 PRB4P10163 310 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 C1orf100Q5SVJ3 147 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 DIRC3C9JPN6 131 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 FMC1Q96HJ9 113 aa7.38□□□□□ -1.23
LIMCH1-202ENST00000381753 UBE2D1P51668 147 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 SFRP2Q96HF1 295 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 SCGB3A1Q96QR1 104 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 GYPEP15421 78 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 HOXA5P20719 270 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 NTF4P34130 210 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 SMIM8Q96KF7 97 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 RLFQ13129 1914 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 IGKV2-40A0A087WW87 121 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 IGKV2D-40P01614 121 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 MAJINQ3KP22 176 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 RASL11AQ6T310 242 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 ODF3L1Q8IXM7 274 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 JKAMPQ9P055 326 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 DKK1O94907 266 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 IGLV1-44P01699 117 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNF25P17030 456 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNF138P52744 262 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 GAGE6Q13070 117 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 NLRC5Q86WI3 1866 aa7.37□□□□□ -1.23
LIMCH1-202ENST00000381753 CBLN1P23435 193 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 CLPSL2Q6UWE3 100 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 Q6ZQT7 251 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 ZC2HC1AQ96GY0 325 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 ZNRD1Q9P1U0 126 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 PLXNA4Q9HCM2 1894 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 HEATR1Q9H583 2144 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 DEFB131BA0A096LNP1 70 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 C7orf71A4D174 169 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 HMSDA8MTL9 139 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 IGF1P05019 195 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 FABP2P12104 132 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 SLIRPQ9GZT3 109 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 TRAV13-1A0A0B4J241 112 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 IGHV7-4-1A0A0J9YVY3 117 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms