RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MUC6Q6W4X9 2439 aa14.71□□□□□ -0.05
CCDC3-201ENST00000378825 IGLV2-11P01706 119 aa14.71□□□□□ -0.06
CCDC3-201ENST00000378825 LIPFP07098 398 aa14.71□□□□□ -0.06
CCDC3-201ENST00000378825 HTR1DP28221 377 aa14.71□□□□□ -0.06
CCDC3-201ENST00000378825 UQCRFS1P47985 274 aa14.71□□□□□ -0.06
CCDC3-201ENST00000378825 ARF6P62330 175 aa14.71□□□□□ -0.06
CCDC3-201ENST00000378825 SUB1P53999 127 aaKnown RBP eCLIP14.7□□□□□ -0.06
CCDC3-201ENST00000378825 LYZP61626 148 aa14.7□□□□□ -0.06
CCDC3-201ENST00000378825 FMC1Q96HJ9 113 aa14.7□□□□□ -0.06
CCDC3-201ENST00000378825 SH3BGRL2Q9UJC5 107 aa14.7□□□□□ -0.06
CCDC3-201ENST00000378825 PPIAL4DF5H284 164 aa14.7□□□□□ -0.06
CCDC3-201ENST00000378825 FAM169BQ8N8A8 192 aa14.7□□□□□ -0.06
CCDC3-201ENST00000378825 NDFIP1Q9BT67 221 aa14.7□□□□□ -0.06
CCDC3-201ENST00000378825 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.69□□□□□ -0.06
CCDC3-201ENST00000378825 INS-IGF2F8WCM5 200 aa14.69□□□□□ -0.06
CCDC3-201ENST00000378825 SRSF12Q8WXF0 261 aaKnown RBP14.69□□□□□ -0.06
CCDC3-201ENST00000378825 ZNF492Q9P255 531 aa14.69□□□□□ -0.06
CCDC3-201ENST00000378825 C1orf185Q5T7R7 199 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 TEX36Q5VZQ5 186 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 PIP4P2Q8N4L2 257 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 SAP30O75446 220 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 CRYGCP07315 174 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 GPR183P32249 361 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 CT83Q5H943 113 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 C12orf54Q6X4T0 127 aa14.68□□□□□ -0.06
CCDC3-201ENST00000378825 LOC389332A0A1B0GUA5 103 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 GAGE12BA1L429 117 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 NPIPB6E9PJ23 425 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 HLA-DRB1P01911 266 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 OR5AL1P0C617 328 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 LINC01545Q5VT33 79 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 PET117Q6UWS5 81 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 STXBP6Q8NFX7 210 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 VSTM2AQ8TAG5 236 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 CCL17Q92583 94 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 A0A1W2PRD5 423 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 A0A1W2PRF3 423 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 A0A1W2PRM7 423 aa14.67□□□□□ -0.06
CCDC3-201ENST00000378825 TNFRSF1AP19438 455 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 CD40P25942 277 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 Q6ZS92 163 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 ZNF747Q9BV97 191 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 PPBPP02775 128 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 FAM162BQ5T6X4 162 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 ARL6IP6Q8N6S5 226 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 TRGV9Q99603 122 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 AP5S1Q9NUS5 200 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 CTSZQ9UBR2 303 aa14.66□□□□□ -0.06
CCDC3-201ENST00000378825 A0A096LNJ9 63 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 C7orf71A4D174 169 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 HAX1O00165 279 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 HIST1H1AQ02539 215 aaPredicted RBP14.65□□□□□ -0.06
CCDC3-201ENST00000378825 OR8A1Q8NGG7 326 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 IGFBPL1Q8WX77 278 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 SMIM12Q96EX1 92 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 TMSB15BA0A087X1C1 80 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 IFI27P40305 119 aaPredicted RBP14.65□□□□□ -0.06
CCDC3-201ENST00000378825 C8orf46Q8TAG6 207 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 GFRA4Q9GZZ7 299 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 HILPDAQ9Y5L2 63 aa14.65□□□□□ -0.06
CCDC3-201ENST00000378825 SOX21Q9Y651 276 aaPredicted RBP14.65□□□□□ -0.06
CCDC3-201ENST00000378825 CD5LO43866 347 aa14.65□□□□□ -0.07
CCDC3-201ENST00000378825 CRIP1P50238 77 aa14.65□□□□□ -0.07
CCDC3-201ENST00000378825 VMA21Q3ZAQ7 101 aa14.65□□□□□ -0.07
CCDC3-201ENST00000378825 HSPB8Q9UJY1 196 aa14.65□□□□□ -0.07
CCDC3-201ENST00000378825 A0A1B0GUT8 65 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 FAM231BA6NCW3 169 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 M0R3E3 92 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 COX8AP10176 69 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 BCL6BQ8N143 479 aaPredicted RBP14.64□□□□□ -0.07
CCDC3-201ENST00000378825 SLC25A39Q9BZJ4 359 aaPredicted RBP14.64□□□□□ -0.07
CCDC3-201ENST00000378825 HIGD1AQ9Y241 93 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 S4R3C0 116 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 JMJD8Q96S16 334 aa14.64□□□□□ -0.07
CCDC3-201ENST00000378825 RPL27AP46776 148 aaKnown RBP14.63□□□□□ -0.07
CCDC3-201ENST00000378825 IGFL3Q6UXB1 125 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 WFDC8Q8IUA0 241 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 PRSS33Q8NF86 280 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 OR4A5Q8NH83 315 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 PRSS3P2Q8NHM4 247 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 ASH1LQ9NR48 2969 aaKnown RBP14.63□□□□□ -0.07
CCDC3-201ENST00000378825 CUL9Q8IWT3 2517 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 RBP4P02753 201 aa14.63□□□□□ -0.07
CCDC3-201ENST00000378825 TLN1Q9Y490 2541 aaKnown RBP14.62□□□□□ -0.07
CCDC3-201ENST00000378825 TMEM213A2RRL7 107 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 PRSS57Q6UWY2 283 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 BPIFA4PQ86YQ2 179 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 WFDC3Q8IUB2 231 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 TMEM186Q96B77 213 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 C8orf49Q96NF6 230 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 IGLC1P0CG04 106 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 FGF6P10767 208 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 RIPPLY3P57055 190 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 MEF2CQ06413 473 aaPredicted RBP14.62□□□□□ -0.07
CCDC3-201ENST00000378825 TCF15Q12870 199 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 OTORQ9NRC9 128 aa14.62□□□□□ -0.07
CCDC3-201ENST00000378825 SPTA1P02549 2419 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 SERTM2A0A1B0GWG4 89 aa14.61□□□□□ -0.07
CCDC3-201ENST00000378825 LOXP28300 417 aaPredicted RBP14.61□□□□□ -0.07
CCDC3-201ENST00000378825 ADIPOQQ15848 244 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms