RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 GAFA1Q96PS6 74 aa12.97□□□□□ -0.33
COL17A1-202ENST00000369733 LYNX1G3V0Z9 82 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 IGHV3-11P01762 117 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 ARMS2P0C7Q2 107 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 LYNX1P0DP58 116 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 Q8TAT8 98 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 ERG28Q9UKR5 140 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 ICE1Q9Y2F5 2266 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 KIAA2026Q5HYC2 2103 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 NEU4Q8WWR8 484 aaPredicted RBP12.96□□□□□ -0.33
COL17A1-202ENST00000369733 PRDM6Q9NQX0 595 aa12.96□□□□□ -0.33
COL17A1-202ENST00000369733 FNDC1Q4ZHG4 1894 aaPredicted RBP12.96□□□□□ -0.33
COL17A1-202ENST00000369733 RSPO1Q2MKA7 263 aaPredicted RBP12.96□□□□□ -0.33
COL17A1-202ENST00000369733 MMP23AO75900 390 aa12.96□□□□□ -0.34
COL17A1-202ENST00000369733 RNF182Q8N6D2 247 aa12.96□□□□□ -0.34
COL17A1-202ENST00000369733 DLX4Q92988 240 aaPredicted RBP12.96□□□□□ -0.34
COL17A1-202ENST00000369733 COLQQ9Y215 455 aaPredicted RBP12.96□□□□□ -0.34
COL17A1-202ENST00000369733 TRAV12-3A0A0B4J271 114 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 IGHV1-3A0A0C4DH29 117 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 SMIM27A0A1W2PRY6 76 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 UCNP55089 124 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 GAGE2BQ13066 116 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 GAGE2EQ4V326 116 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 GAGE2DQ9UEU5 116 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 DUX3Q96PT4 197 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 PLA2G2EQ9NZK7 142 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 ZNF492Q9P255 531 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 WNT2P09544 360 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 VDAC2P45880 294 aaPredicted RBP12.95□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM101Q96IK0 257 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 ITGB1BP1O14713 200 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 LYPD1Q8N2G4 141 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM14BQ9NUH8 114 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 GGTLC3B5MD39 225 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 PRTN3P24158 256 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 NCOR1P1Q9H4R4 102 aa12.95□□□□□ -0.34
COL17A1-202ENST00000369733 IGHV3-64A0A075B6Q5 118 aa12.94□□□□□ -0.34
COL17A1-202ENST00000369733 DOCK11Q5JSL3 2073 aa12.94□□□□□ -0.34
COL17A1-202ENST00000369733 SLC25A15Q9Y619 301 aa12.94□□□□□ -0.34
COL17A1-202ENST00000369733 IGLV3-1P01715 115 aa12.94□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM105Q8N8V8 129 aa12.94□□□□□ -0.34
COL17A1-202ENST00000369733 COL4A6Q14031 1691 aa12.94□□□□□ -0.34
COL17A1-202ENST00000369733 YAE1D1Q9NRH1 226 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 IGKV3D-20A0A0C4DH25 116 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 IGHV1-24A0A0C4DH33 117 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 C9orf118A6NHY6 69 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 UNQ6494/PRO21346Q6UXR6 183 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 RCHY1Q96PM5 261 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 PGPEP1Q9NXJ5 209 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 RNASE6Q93091 150 aaKnown RBP12.93□□□□□ -0.34
COL17A1-202ENST00000369733 CNTFRP26992 372 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 CT83Q5H943 113 aa12.93□□□□□ -0.34
COL17A1-202ENST00000369733 HELZP42694 1942 aaKnown RBP12.93□□□□□ -0.34
COL17A1-202ENST00000369733 LMO1P25800 156 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 SIGLEC15Q6ZMC9 328 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 KIR2DL5BA0A0G2JN68 375 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 KIR2DL5BA0A0G2JPC4 375 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 LINC01549A6NIU2 74 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 KIR2DL5AQ8N109 375 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 TRBV7-9A0A0J9YWB2 115 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 THSD7BQ9C0I4 1608 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 CD28P10747 220 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 CFHR2P36980 270 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 FAM231DQ6ZW35 169 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 SIGLEC9Q9Y336 463 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM178BH3BS89 294 aa12.92□□□□□ -0.34
COL17A1-202ENST00000369733 COA6Q5JTJ3 125 aaKnown RBP12.92□□□□□ -0.34
COL17A1-202ENST00000369733 OVOL1O14753 267 aa12.91□□□□□ -0.34
COL17A1-202ENST00000369733 IGFL4Q6B9Z1 124 aa12.91□□□□□ -0.34
COL17A1-202ENST00000369733 TOMM7Q9P0U1 55 aa12.91□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM155Q4W5P6 130 aa12.91□□□□□ -0.34
COL17A1-202ENST00000369733 CENPVQ7Z7K6 275 aaPredicted RBP12.91□□□□□ -0.34
COL17A1-202ENST00000369733 C11orf52Q96A22 123 aa12.91□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM213A2RRL7 107 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 ATP5J2P56134 94 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 TMEM238C9JI98 176 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 SPINK8P0C7L1 97 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 RNF5Q99942 180 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 COX8AP10176 69 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 PAX8Q06710 450 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 C15orf32Q32M92 178 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 K7EN84 100 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 SPACA3Q8IXA5 215 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 MDS2Q8NDY4 140 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 ABHD17AQ96GS6 310 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 ZNRD1Q9P1U0 126 aa12.9□□□□□ -0.34
COL17A1-202ENST00000369733 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.89□□□□□ -0.35
COL17A1-202ENST00000369733 TRAV40A0A0B4J280 105 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 A0A1W2PPI3 338 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 PRSS47A8MTI9 375 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 SHANK2-AS3Q9BTD1 123 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.89□□□□□ -0.35
COL17A1-202ENST00000369733 K7EP13 123 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 M0R2P5 195 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 WDR86Q86TI4 376 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 TNFRSF6BO95407 300 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 PYGO2Q9BRQ0 406 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 ZNF562Q6V9R5 426 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 TMEM75Q8N9X5 138 aa12.89□□□□□ -0.35
COL17A1-202ENST00000369733 DEFB104AQ8WTQ1 72 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms