RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FAM74A7A6NL05 159 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 CXorf1O96002 111 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 HOXD3P31249 432 aaPredicted RBP15.22■□□□□ 0.03
CLN3-205ENST00000359984 KRTAP24-1Q3LI83 254 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 FAM74A3Q4VXF1 159 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 KHDC3LQ587J8 217 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 OR1N2Q8NGR9 330 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 DUX3Q96PT4 197 aa15.22■□□□□ 0.03
CLN3-205ENST00000359984 EIF5A2Q9GZV4 153 aaKnown RBP15.22■□□□□ 0.03
CLN3-205ENST00000359984 LINC01619G3V211 115 aa15.21■□□□□ 0.03
CLN3-205ENST00000359984 SNAPINO95295 136 aa15.21■□□□□ 0.03
CLN3-205ENST00000359984 PPT1P50897 306 aa15.21■□□□□ 0.03
CLN3-205ENST00000359984 S100A7AQ86SG5 101 aa15.21■□□□□ 0.03
CLN3-205ENST00000359984 METTL26Q96S19 204 aa15.21■□□□□ 0.03
CLN3-205ENST00000359984 RBFOX3A6NFN3 312 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 ADARB2-AS1A8MUL3 147 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 OR7C2O60412 319 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 NPPCP23582 126 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 CRYBB3P26998 211 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 GCHFRP30047 84 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 AWAT1Q58HT5 328 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 PQLC2Q6ZP29 291 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 DPF1Q92782 380 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 RARRES2Q99969 163 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 APOHP02749 345 aaPredicted RBP15.2■□□□□ 0.02
CLN3-205ENST00000359984 RAX2Q96IS3 184 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 U3KQE9 123 aa15.2■□□□□ 0.02
CLN3-205ENST00000359984 IGHV3-49A0A0A0MS15 119 aa15.19■□□□□ 0.02
CLN3-205ENST00000359984 PYYP10082 97 aa15.19■□□□□ 0.02
CLN3-205ENST00000359984 SLURP1P55000 103 aa15.19■□□□□ 0.02
CLN3-205ENST00000359984 SYNJ2BPP57105 145 aa15.19■□□□□ 0.02
CLN3-205ENST00000359984 KLF5Q13887 457 aaPredicted RBP15.19■□□□□ 0.02
CLN3-205ENST00000359984 TM4SF20Q53R12 229 aa15.19■□□□□ 0.02
CLN3-205ENST00000359984 PAXXQ9BUH6 204 aa15.19■□□□□ 0.02
CLN3-205ENST00000359984 S100A7P31151 101 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 ZNF506Q5JVG8 444 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 SLC35B3Q9H1N7 401 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 OR51M1Q9H341 326 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 GNG13Q9P2W3 67 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 ATRQ13535 2644 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 K7EMT4 169 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 LGALS9O00182 355 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 BUB3O43684 328 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 OR10J4P0C629 311 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 GP9P14770 177 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 REC114Q7Z4M0 266 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 CLRN3Q8NCR9 226 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 STXBP6Q8NFX7 210 aa15.18■□□□□ 0.02
CLN3-205ENST00000359984 DAZ1Q9NQZ3 744 aaKnown RBP15.18■□□□□ 0.02
CLN3-205ENST00000359984 IGHV3OR16-13A0A075B7E8 117 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 IGHV3-74A0A0B4J1X5 117 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 IGHV3-66A0A0C4DH42 116 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 CCL24O00175 119 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 NSUN5P1Q3KNT7 163 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 NDUFA11Q86Y39 141 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 C1QL4Q86Z23 238 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 UFC1Q9Y3C8 167 aa15.17■□□□□ 0.02
CLN3-205ENST00000359984 PSMB3P49720 205 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 FHL3Q13643 280 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 PMS2P11Q13670 270 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 ICAM4Q14773 271 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 FXYD5Q96DB9 178 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 TMEM14CQ9P0S9 112 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 MRPS12O15235 138 aaKnown RBP15.16■□□□□ 0.02
CLN3-205ENST00000359984 SRP19P09132 144 aaKnown RBP15.16■□□□□ 0.02
CLN3-205ENST00000359984 SNRPCP09234 159 aaKnown RBP15.16■□□□□ 0.02
CLN3-205ENST00000359984 UBE2L3P68036 154 aaKnown RBP15.16■□□□□ 0.02
CLN3-205ENST00000359984 HAGHQ16775 308 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 BPIFA4PQ86YQ2 179 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 OR8I2Q8N0Y5 310 aa15.16■□□□□ 0.02
CLN3-205ENST00000359984 A8MWP6 167 aa15.15■□□□□ 0.02
CLN3-205ENST00000359984 EDN2P20800 178 aa15.15■□□□□ 0.02
CLN3-205ENST00000359984 C1orf194Q5T5A4 169 aa15.15■□□□□ 0.02
CLN3-205ENST00000359984 DLX4Q92988 240 aaPredicted RBP15.15■□□□□ 0.02
CLN3-205ENST00000359984 TMEM167BQ9NRX6 74 aa15.15■□□□□ 0.02
CLN3-205ENST00000359984 RNF24Q9Y225 148 aa15.15■□□□□ 0.02
CLN3-205ENST00000359984 IGHV7-4-1A0A0J9YVY3 117 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 LOC102723971A0A1B0GUV8 181 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 TMEM213A2RRL7 107 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 TSPAN4O14817 238 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 SMPXQ9UHP9 88 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 TENM1Q9UKZ4 2725 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 C16orf54Q6UWD8 224 aa15.14■□□□□ 0.01
CLN3-205ENST00000359984 FBN1P35555 2871 aaKnown RBP15.13■□□□□ 0.01
CLN3-205ENST00000359984 H3BQ15 152 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 PAGE4O60829 102 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 BCL2P10415 239 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 RPL7P18124 248 aaKnown RBP15.13■□□□□ 0.01
CLN3-205ENST00000359984 UBE2G2P60604 165 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 CTAG1AP78358 180 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 TMEM88Q6PEY1 159 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 CITED1Q99966 193 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 MANBALQ9NQG1 85 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 SMAD5-AS1Q9Y6J3 95 aa15.13■□□□□ 0.01
CLN3-205ENST00000359984 IFNA1P01562 189 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 NBEAP1P0C6P0 100 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 IGLC2P0DOY2 106 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 HIST1H1EP10412 219 aaKnown RBP15.12■□□□□ 0.01
CLN3-205ENST00000359984 CBLN2Q8IUK8 224 aa15.12■□□□□ 0.01
CLN3-205ENST00000359984 OR4F17Q8NGA8 305 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms