RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ERCC8Q13216 396 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 LCN12Q6JVE5 192 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 GATD1Q8NB37 220 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 LSM4Q9Y4Z0 139 aaKnown RBP12.7□□□□□ -0.38
PTPRF-201ENST00000359947 NAPSAO96009 420 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 HELZP42694 1942 aaKnown RBP12.7□□□□□ -0.38
PTPRF-201ENST00000359947 FAM223BA6NKX1 122 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 IGHG3P01860 377 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 RNF144BQ7Z419 303 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 FAM223AQ8IWN6 122 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 PLXND1Q9Y4D7 1925 aa12.7□□□□□ -0.38
PTPRF-201ENST00000359947 TRAV13-1A0A0B4J241 112 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 F2Z2F3 143 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 NDUFS8O00217 210 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 LINC00473A8K010 186 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 IGHV3-16A0A0C4DH30 117 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 RNF222A6NCQ9 220 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 OOSP1A8MZH6 123 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 KNCNA6PVL3 124 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 INS-IGF2F8WCM5 200 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 ZNF138P52744 262 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 C14orf178Q8N769 122 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-201ENST00000359947 WFDC1Q9HC57 220 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 CACNA1HO95180 2353 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 SERF1AO75920 110 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 MLANAQ16655 118 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 DMRT1Q9Y5R6 373 aa12.69□□□□□ -0.38
PTPRF-201ENST00000359947 ORMDL2Q53FV1 153 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 MGST2Q99735 147 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 IGKV1-16P04430 117 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 DAD1P61803 113 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 PRSS33Q8NF86 280 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 LINC00477Q96M19 166 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 ATP6V0E1O15342 81 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 DPM2O94777 84 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 HGFACQ04756 655 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 LINC01619G3V211 115 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 CGB7P0DN87 165 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 NIT1Q86X76 327 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 DKK1O94907 266 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 C6orf226Q5I0X4 101 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 CHD3Q12873 2000 aaKnown RBP12.68□□□□□ -0.38
PTPRF-201ENST00000359947 A0A1W2PRE2 83 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 GFI1Q99684 422 aa12.68□□□□□ -0.38
PTPRF-201ENST00000359947 PNRC2Q9NPJ4 139 aaKnown RBP12.68□□□□□ -0.38
PTPRF-201ENST00000359947 DAZ1Q9NQZ3 744 aaKnown RBP12.67□□□□□ -0.38
PTPRF-201ENST00000359947 CD5P06127 495 aa12.67□□□□□ -0.38
PTPRF-201ENST00000359947 LINC00518Q8N0U6 118 aa12.67□□□□□ -0.38
PTPRF-201ENST00000359947 GGTLC1Q9BX51 225 aa12.67□□□□□ -0.38
PTPRF-201ENST00000359947 TRAV8-1A0A0A6YYK1 113 aa12.67□□□□□ -0.38
PTPRF-201ENST00000359947 G3V318 75 aa12.67□□□□□ -0.38
PTPRF-201ENST00000359947 SSBP2P81877 361 aaPredicted RBP12.67□□□□□ -0.38
PTPRF-201ENST00000359947 SRSF3P84103 164 aaKnown RBP12.67□□□□□ -0.38
PTPRF-201ENST00000359947 NHP2Q9NX24 153 aaKnown RBP12.67□□□□□ -0.38
PTPRF-201ENST00000359947 LAGE3Q14657 143 aa12.67□□□□□ -0.38
PTPRF-201ENST00000359947 IGHV1-69DA0A0B4J2H0 117 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 FAM90A9PA6NNJ1 464 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 IGHV1-69P01742 117 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 LYZL1Q6UWQ5 148 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 TRAV8-2A0A0B4J237 113 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 SH2D1AO60880 128 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 TNFSF13O75888 250 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 PLNP26678 52 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 D6R8Y8 96 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 HOXA3O43365 443 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-201ENST00000359947 DTX1Q86Y01 620 aa12.66□□□□□ -0.38
PTPRF-201ENST00000359947 DMRTC2Q8IXT2 367 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-201ENST00000359947 PRTN3P24158 256 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 SPINK13Q1W4C9 94 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 TMEM155Q4W5P6 130 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 DERL1Q9BUN8 251 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 Q6P435 159 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 DYSFO75923 2080 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 A0A096LPF7 62 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 SPOCK3Q9BQ16 436 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 KLK9Q9UKQ9 250 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 WDR81Q562E7 1941 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 NRN1Q9NPD7 142 aa12.65□□□□□ -0.38
PTPRF-201ENST00000359947 IGKCP01834 107 aa12.65□□□□□ -0.39
PTPRF-201ENST00000359947 GATA3P23771 443 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 C9orf139Q6ZV77 190 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 TRGV9Q99603 122 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 PRDM13Q9H4Q3 707 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 THSD7BQ9C0I4 1608 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 ID3Q02535 119 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 RFNGQ9Y644 331 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 E9PQ18 207 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 J3QRE1 110 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 UBE2E1P51965 193 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 TEX43Q6ZNM6 134 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 SPCS1Q9Y6A9 102 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 CSTL1Q9H114 145 aa12.64□□□□□ -0.39
PTPRF-201ENST00000359947 H0YIZ8 118 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 RNF5Q99942 180 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 REG4Q9BYZ8 158 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 WDR83OSQ9Y284 106 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 DUX4L9Q6RFH8 374 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-201ENST00000359947 IFITM2Q01629 132 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 CLDN16Q9Y5I7 305 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 GGTLC3B5MD39 225 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms