RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IGHV1-18A0A0C4DH31 117 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 D6R8Y8 96 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 TIMM23BQ5SRD1 257 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 TMEM108Q6UXF1 575 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 ZNF833PQ6ZTB9 187 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 OSR1Q8TAX0 266 aaPredicted RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 DKK2Q9UBU2 259 aa5.41□□□□□ -1.54
VPS39-202ENST00000348544 RPUSD1Q9UJJ7 312 aaKnown RBP5.41□□□□□ -1.54
VPS39-202ENST00000348544 SPAARA0A1B0GVQ0 90 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 GAGE12HA6NDE8 117 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 FBLL1A6NHQ2 334 aaKnown RBP5.4□□□□□ -1.54
VPS39-202ENST00000348544 K7EMI3 77 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 CRYGCP07315 174 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 SMIM13P0DJ93 91 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 CRIP1P50238 77 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 RIGQ13278 110 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 PEAR1Q5VY43 1037 aaPredicted RBP5.4□□□□□ -1.54
VPS39-202ENST00000348544 PMS2CLQ68D20 193 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 TMEM167AQ8TBQ9 72 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 ZNF414Q96IQ9 312 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 LINC00574Q9H8X3 128 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 TPSG1Q9NRR2 321 aa5.4□□□□□ -1.54
VPS39-202ENST00000348544 SPANXB1Q9NS25 103 aaPredicted RBP5.4□□□□□ -1.54
VPS39-202ENST00000348544 ZFHX4Q86UP3 3567 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 CADP27708 2225 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 HEATR1Q9H583 2144 aaKnown RBP5.4□□□□□ -1.55
VPS39-202ENST00000348544 IGHV3-21A0A0B4J1V1 117 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 A0A1W2PPI3 338 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 M0R296 226 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 IGLV1-44P01699 117 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 FTH1P19P0C7X4 201 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 GCSHP23434 173 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 DIAPH2-AS1Q14236 149 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 WFDC2Q14508 124 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 CD300EQ496F6 205 aaPredicted RBP5.4□□□□□ -1.55
VPS39-202ENST00000348544 CCDC144NLQ6NUI1 221 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 WFDC3Q8IUB2 231 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 BCL6BQ8N143 479 aaPredicted RBP5.4□□□□□ -1.55
VPS39-202ENST00000348544 FAM216BQ8N7L0 139 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 CNEP1R1Q8N9A8 125 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 DEFB108BQ8NET1 73 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 GAFA1Q96PS6 74 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 ATP6V0BQ99437 205 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 VGLL1Q99990 258 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 TPPP3Q9BW30 176 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 COL25A1Q9BXS0 654 aaPredicted RBP5.4□□□□□ -1.55
VPS39-202ENST00000348544 SPRY4Q9C004 299 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 SH3BGRL2Q9UJC5 107 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 U3KQK5 164 aa5.4□□□□□ -1.55
VPS39-202ENST00000348544 SPENQ96T58 3664 aaKnown RBP5.39□□□□□ -1.55
VPS39-202ENST00000348544 WI2-2373I1.2A0A1W2PRP0 233 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 TMEM213A2RRL7 107 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 C16orf97H3BN30 126 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 NDUFS7O75251 213 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 IGLV2-23P01705 113 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 MRGPRG-AS1Q2M3A8 158 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 HCP5Q6MZN7 132 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 FOXI2Q6ZQN5 318 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 ZNF788Q6ZQV5 615 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 ZNF493Q6ZR52 646 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 AMN1Q8IY45 258 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 IFI27L1Q96BM0 104 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 TRGV9Q99603 122 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 CCL13Q99616 98 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 RAB9BQ9NP90 201 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 OTORQ9NRC9 128 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.39□□□□□ -1.55
VPS39-202ENST00000348544 KLRC4-KLRK1H3BQV0 150 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 SPRY3O43610 288 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 HBDP02042 147 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 KIR2DL2P43627 348 aaPredicted RBP5.39□□□□□ -1.55
VPS39-202ENST00000348544 MZT1Q08AG7 82 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 DHRS13Q6UX07 377 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 RITA1Q96K30 269 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 PRELID3AQ96N28 172 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 SPATA25Q9BR10 227 aa5.39□□□□□ -1.55
VPS39-202ENST00000348544 ZNF71Q9NQZ8 489 aaPredicted RBP5.39□□□□□ -1.55
VPS39-202ENST00000348544 A0A1B0GV72 72 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 SERTM2A0A1B0GWG4 89 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 A0A1W2PNU3 283 aaPredicted RBP5.38□□□□□ -1.55
VPS39-202ENST00000348544 SMKR1H3BMG3 65 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 APELAP0DMC3 54 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 SUB1P53999 127 aaKnown RBP eCLIP5.38□□□□□ -1.55
VPS39-202ENST00000348544 C17orf77Q96MU5 243 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 SPAG8Q99932 426 aaPredicted RBP5.38□□□□□ -1.55
VPS39-202ENST00000348544 TRBV6-1A0A0K0K1D8 114 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 A0A1B0GW15 77 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 RAB9AP51151 201 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 TMEM95Q3KNT9 176 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 MRPL51Q4U2R6 128 aaKnown RBP5.38□□□□□ -1.55
VPS39-202ENST00000348544 FAM104BQ5XKR9 115 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 SH2D6Q7Z4S9 175 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 C8orf46Q8TAG6 207 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 CHAC1Q9BUX1 264 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 ZNF576Q9H609 170 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 HHLA3Q9XRX5 114 aa5.38□□□□□ -1.55
VPS39-202ENST00000348544 ABCA1O95477 2261 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 A0A1W2PRD5 423 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 A0A1W2PRF3 423 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 A0A1W2PRM7 423 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms