RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 WFDC3Q8IUB2 231 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 APRG1Q8IVJ8 170 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 FAM24BQ8N5W8 94 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 THAP8Q8NA92 274 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 OR51G1Q8NGK1 321 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 RAB40CQ96S21 281 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 GGTLC1Q9BX51 225 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 TREM1Q9NP99 234 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 UQCC1Q9NVA1 299 aa11.72□□□□□ -0.53
CLN3-201ENST00000333496 SEC11BP0C7V7 166 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 RPL11P62913 178 aaKnown RBP11.71□□□□□ -0.53
CLN3-201ENST00000333496 PAFAH1B2P68402 229 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 C16orf54Q6UWD8 224 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 GLMPQ8WWB7 406 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 RNF125Q96EQ8 232 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 TRGV9Q99603 122 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 MAP6D1Q9H9H5 199 aa11.71□□□□□ -0.53
CLN3-201ENST00000333496 LYRM2Q9NU23 88 aaPredicted RBP11.71□□□□□ -0.53
CLN3-201ENST00000333496 CSMD3Q7Z407 3707 aa11.71□□□□□ -0.54
CLN3-201ENST00000333496 BUB3O43684 328 aa11.71□□□□□ -0.54
CLN3-201ENST00000333496 RAB5CP51148 216 aa11.71□□□□□ -0.54
CLN3-201ENST00000333496 TMEM14EPQ6UXP3 125 aa11.71□□□□□ -0.54
CLN3-201ENST00000333496 EDA2RQ9HAV5 297 aa11.71□□□□□ -0.54
CLN3-201ENST00000333496 TRAV2A0A0B4J234 112 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 FAM24AA6NFZ4 105 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 Q6ZRG5 221 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 STPG3Q8N7X2 389 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 LYPD6BQ8NI32 183 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 SLC25A31Q9H0C2 315 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 HRH4Q9H3N8 390 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 RABAC1Q9UI14 185 aa11.7□□□□□ -0.54
CLN3-201ENST00000333496 IGSF23A1L1A6 192 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 FAM74A7A6NL05 159 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 K7EQG2 157 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 TAS2R30P59541 319 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 EWSR1Q01844 656 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLN3-201ENST00000333496 FAM74A3Q4VXF1 159 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 OR8G2PQ6IF36 304 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 TMEM252Q8N6L7 170 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 STXBP6Q8NFX7 210 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 DCANP1Q8TF63 244 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 GRAMD2BQ96HH9 432 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 PBDC1Q9BVG4 233 aa11.69□□□□□ -0.54
CLN3-201ENST00000333496 H2AFB1P0C5Y9 115 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 METTL15P1P0C7V9 234 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 SPP1P10451 314 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 CMC4P56277 68 aaPredicted RBP11.68□□□□□ -0.54
CLN3-201ENST00000333496 FLI1Q01543 452 aaPredicted RBP11.68□□□□□ -0.54
CLN3-201ENST00000333496 AKR1C1Q04828 323 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 TMEM182Q6ZP80 229 aaPredicted RBP11.68□□□□□ -0.54
CLN3-201ENST00000333496 RPL35AP18077 110 aaKnown RBP11.68□□□□□ -0.54
CLN3-201ENST00000333496 DEFB131AP59861 70 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 LYZP61626 148 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 NHLH2Q02577 135 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 ZNF266Q14584 549 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 TMEM144Q7Z5S9 345 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 SMIM3Q9BZL3 60 aa11.68□□□□□ -0.54
CLN3-201ENST00000333496 FABP1P07148 127 aa11.67□□□□□ -0.54
CLN3-201ENST00000333496 GATA2P23769 480 aaPredicted RBP11.67□□□□□ -0.54
CLN3-201ENST00000333496 SRSF3P84103 164 aaKnown RBP11.67□□□□□ -0.54
CLN3-201ENST00000333496 BAXQ07812 192 aa11.67□□□□□ -0.54
CLN3-201ENST00000333496 ARL16Q0P5N6 197 aa11.67□□□□□ -0.54
CLN3-201ENST00000333496 LEMD1Q68G75 181 aa11.67□□□□□ -0.54
CLN3-201ENST00000333496 OVOL2Q9BRP0 275 aa11.67□□□□□ -0.54
CLN3-201ENST00000333496 KIR2DL5BA0A0G2JN68 375 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 KIR2DL5BA0A0G2JPC4 375 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 HELTA6NFD8 242 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 SFTA3P0C7M3 94 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 APOC4P55056 127 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 SIGLEC15Q6ZMC9 328 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 KIR2DL5AQ8N109 375 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 KIR2DL5BQ8NHK3 375 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 MUC7Q8TAX7 377 aa11.66□□□□□ -0.54
CLN3-201ENST00000333496 KMT2CQ8NEZ4 4911 aaKnown RBP11.65□□□□□ -0.54
CLN3-201ENST00000333496 CST7O76096 145 aa11.65□□□□□ -0.54
CLN3-201ENST00000333496 ZNF688P0C7X2 276 aa11.65□□□□□ -0.54
CLN3-201ENST00000333496 DLK1P80370 383 aa11.65□□□□□ -0.54
CLN3-201ENST00000333496 STX12Q86Y82 276 aa11.65□□□□□ -0.54
CLN3-201ENST00000333496 OR10P1Q8NGE3 313 aa11.65□□□□□ -0.54
CLN3-201ENST00000333496 STARD9Q9P2P6 4700 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 SMCO3A2RU48 225 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 CAMLGP49069 296 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 SULT1A1P50225 295 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 PEA15Q15121 130 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 Q6ZWC4 215 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 WFDC1Q9HC57 220 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 FNDC10F2Z333 226 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 C3orf84H3BNL1 204 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 DEFB135Q30KP9 77 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 TMEM217Q8N7C4 229 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 NPVFQ9HCQ7 196 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 NRN1Q9NPD7 142 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 PLA2G2EQ9NZK7 142 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 PRELID1Q9Y255 219 aa11.64□□□□□ -0.55
CLN3-201ENST00000333496 UMAD1C9J7I0 102 aa11.63□□□□□ -0.55
CLN3-201ENST00000333496 UBE2CO00762 179 aa11.63□□□□□ -0.55
CLN3-201ENST00000333496 CLINT1Q14677 625 aa11.63□□□□□ -0.55
CLN3-201ENST00000333496 C1orf194Q5T5A4 169 aa11.63□□□□□ -0.55
CLN3-201ENST00000333496 CYP2G1PQ6ZSU1 146 aa11.63□□□□□ -0.55
CLN3-201ENST00000333496 OR5C1Q8NGR4 320 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms