RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 TRAV3A0A0B4J244 114 aa6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 A0A1W2PPI3 338 aa6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 YPEL3P61236 119 aaPredicted RBP6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 SGMS2Q8NHU3 365 aa6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 A0A1B0GW15 77 aa6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 ZNF688P0C7X2 276 aa6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 MRPL27Q9P0M9 148 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 PKD1L2Q7Z442 2459 aa6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 CHD3Q12873 2000 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-201ENST00000317968 CCL24O00175 119 aa6.84□□□□□ -1.32
PDLIM5-201ENST00000317968 NDUFA3O95167 84 aa6.84□□□□□ -1.32
PDLIM5-201ENST00000317968 CKS2P33552 79 aa6.84□□□□□ -1.32
PDLIM5-201ENST00000317968 TAS2R60P59551 318 aa6.84□□□□□ -1.32
PDLIM5-201ENST00000317968 SPG11Q96JI7 2443 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 IGFBPL1Q8WX77 278 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 LINC00477Q96M19 166 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 CREBBPQ92793 2442 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 H3BRM9 83 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 PAX2Q02962 417 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 RHPN1-AS1Q9BWJ2 59 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 NDUFS7O75251 213 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 CD81P60033 236 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 EBI3Q14213 229 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 ACTL10Q5JWF8 245 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 MBD6Q96DN6 1003 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 PTTG1IPP53801 180 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 IBA57Q5T440 356 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 TMEM89A2RUT3 159 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 APCSP02743 223 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 ARL6IP6Q8N6S5 226 aa6.83□□□□□ -1.32
PDLIM5-201ENST00000317968 A0A087WX48 190 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 ATP6V0E1O15342 81 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 ARL14EPLP0DKL9 152 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 OR4C5Q8NGB2 326 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 C11orf1Q9H5F2 150 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.82□□□□□ -1.324e-6■□□□□ 9.7
PDLIM5-201ENST00000317968 DSCAMO60469 2012 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 FABP5P3A8MUU1 101 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 NDUFA4O00483 81 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 LYPD1Q8N2G4 141 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 Q8N7P7 452 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 THAP8Q8NA92 274 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 RCHY1Q96PM5 261 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 TBX15Q96SF7 602 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 H3BQ15 152 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 NUDT3O95989 172 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 TOMM40O96008 361 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 SLAQ13239 276 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 TTC9CQ8N5M4 171 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 KLF17Q5JT82 389 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 MORN3Q6PF18 240 aaPredicted RBP6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 MAP1LC3CQ9BXW4 147 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 CBY1Q9Y3M2 126 aa6.82□□□□□ -1.32
PDLIM5-201ENST00000317968 IGHV3-48P01763 117 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 NDUFA11Q86Y39 141 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 SRD5A3Q9H8P0 318 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 CENPVL3A0A0U1RRI6 287 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 C7orf77A4D0Y5 90 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 PROP1O75360 226 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 SRP19P09132 144 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 LHFPL4Q7Z7J7 247 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 IGHV4-59P01825 116 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 MT-ND6P03923 174 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 LGALS1P09382 135 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 BTF3P20290 206 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 C10orf55Q5SWW7 151 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 OR10W1Q8NGF6 305 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 SRRM4A7MD48 611 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 ZNF324O75467 553 aaPredicted RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 AWAT1Q58HT5 328 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 FAM90A2PQ658T7 463 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 MRAPQ8TCY5 172 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 Q9H3A6 140 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 LY96Q9Y6Y9 160 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 IGKV3OR2-268A0A0C4DH90 116 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 ZNF48Q96MX3 618 aaPredicted RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 MGST2Q99735 147 aa6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 YLPM1P49750 1951 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-201ENST00000317968 C5orf30Q96GV9 206 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 MEGF9Q9H1U4 602 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 TRAV9-1A0A075B6T8 112 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 A0A087WWC5 75 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 SPINK4O60575 86 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 GHRHP01286 108 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 RPL36AP83881 106 aaKnown RBP6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 RPP25LQ8N5L8 163 aaKnown RBP6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 RPL36ALQ969Q0 106 aaKnown RBP6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 ARFGEF3Q5TH69 2177 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 DOPEY1Q5JWR5 2465 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 LY6LH3BQJ8 138 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 WT1-ASQ06250 92 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 ZFP30Q9Y2G7 519 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 IGLC7A0M8Q6 106 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 CA1P00915 261 aaPredicted RBP6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 TCL1AP56279 114 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 PDE6HQ13956 83 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 SOX21Q9Y651 276 aaPredicted RBP6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 MKI67P46013 3256 aaKnown RBP6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 LINC01549A6NIU2 74 aa6.8□□□□□ -1.32
PDLIM5-201ENST00000317968 CRYGCP07315 174 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms