RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LY6LH3BQJ8 138 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 TIMM23O14925 209 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 STPG4Q8N801 248 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 LINC01560Q8TB33 94 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 TMEM190Q8WZ59 177 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 VKORC1Q9BQB6 163 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 SHANK2-AS3Q9BTD1 123 aa14.83□□□□□ -0.04
CPSF3-201ENST00000238112 MRPS16Q9Y3D3 137 aaKnown RBP14.83□□□□□ -0.04
CPSF3-201ENST00000238112 TRBV19A0A075B6N1 114 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 IGHV1-24A0A0C4DH33 117 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 K7EIM0 57 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 HAX1O00165 279 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 HOXB4P17483 251 aaPredicted RBP14.82□□□□□ -0.04
CPSF3-201ENST00000238112 NDFIP1Q9BT67 221 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 TRBV6-1A0A0K0K1D8 114 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 K7EQM0 130 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 LIPFP07098 398 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 LINC00614P0C842 121 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 IGLL1P15814 213 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 FAM120AOSQ5T036 256 aa14.82□□□□□ -0.04
CPSF3-201ENST00000238112 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.81□□□□□ -0.04
CPSF3-201ENST00000238112 H3BRN7 92 aa14.81□□□□□ -0.04
CPSF3-201ENST00000238112 LEPROTL1O95214 131 aa14.81□□□□□ -0.04
CPSF3-201ENST00000238112 SPATA12Q7Z6I5 190 aa14.81□□□□□ -0.04
CPSF3-201ENST00000238112 TMEM75Q8N9X5 138 aa14.81□□□□□ -0.04
CPSF3-201ENST00000238112 PIEZO2Q9H5I5 2752 aa14.81□□□□□ -0.04
CPSF3-201ENST00000238112 ZNF672Q499Z4 452 aaPredicted RBP14.81□□□□□ -0.04
CPSF3-201ENST00000238112 CYB5R2Q6BCY4 276 aa14.81□□□□□ -0.04
CPSF3-201ENST00000238112 ZFHX2Q9C0A1 2572 aaPredicted RBP14.8□□□□□ -0.04
CPSF3-201ENST00000238112 APC2O95996 2303 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 OR4C46A6NHA9 309 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 NBR2O15453 112 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 HLA-DRB1P01911 266 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 IL4P05112 153 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 HTR1DP28221 377 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 C16orf54Q6UWD8 224 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 RNF125Q96EQ8 232 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 ZC2HC1AQ96GY0 325 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 C17orf77Q96MU5 243 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 DMXL2Q8TDJ6 3036 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 CRXO43186 299 aaPredicted RBP14.8□□□□□ -0.04
CPSF3-201ENST00000238112 HINT1P49773 126 aaPredicted RBP14.8□□□□□ -0.04
CPSF3-201ENST00000238112 Q71RC1 249 aaPredicted RBP14.8□□□□□ -0.04
CPSF3-201ENST00000238112 LYPD1Q8N2G4 141 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 ABCA1O95477 2261 aa14.8□□□□□ -0.04
CPSF3-201ENST00000238112 A0A1B0GUT8 65 aa14.79□□□□□ -0.04
CPSF3-201ENST00000238112 SYS1-DBNDD2H3BUS1 97 aa14.79□□□□□ -0.04
CPSF3-201ENST00000238112 APOHP02749 345 aaPredicted RBP14.79□□□□□ -0.04
CPSF3-201ENST00000238112 SIGLEC15Q6ZMC9 328 aa14.79□□□□□ -0.04
CPSF3-201ENST00000238112 C1RLQ9NZP8 487 aa14.79□□□□□ -0.04
CPSF3-201ENST00000238112 HILPDAQ9Y5L2 63 aa14.79□□□□□ -0.04
CPSF3-201ENST00000238112 LDLRAD2Q5SZI1 272 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 ZNF491Q8N8L2 437 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 DPM3Q9P2X0 92 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 PSG8Q9UQ74 426 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 POLEQ07864 2286 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 FAM90A27PA6NNH2 459 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 RIGQ13278 110 aa14.78□□□□□ -0.04
CPSF3-201ENST00000238112 SIAH2O43255 324 aa14.77□□□□□ -0.04
CPSF3-201ENST00000238112 OR5AL1P0C617 328 aa14.77□□□□□ -0.04
CPSF3-201ENST00000238112 PSG3Q16557 428 aa14.77□□□□□ -0.04
CPSF3-201ENST00000238112 LINC00173Q6ZV60 143 aa14.77□□□□□ -0.04
CPSF3-201ENST00000238112 LY6G5BQ8NDX9 201 aa14.77□□□□□ -0.04
CPSF3-201ENST00000238112 NDUFB8O95169 186 aa14.77□□□□□ -0.05
CPSF3-201ENST00000238112 FCGR2BP31994 310 aaPredicted RBP14.77□□□□□ -0.05
CPSF3-201ENST00000238112 CEACAM3P40198 252 aa14.77□□□□□ -0.05
CPSF3-201ENST00000238112 ARF6P62330 175 aa14.77□□□□□ -0.05
CPSF3-201ENST00000238112 S100A7AQ86SG5 101 aa14.77□□□□□ -0.05
CPSF3-201ENST00000238112 RAB1BQ9H0U4 201 aa14.77□□□□□ -0.05
CPSF3-201ENST00000238112 GNG7O60262 68 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 ARMS2P0C7Q2 107 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 ASCL2Q99929 193 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 DCHS1Q96JQ0 3298 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 ZNF785A8K8V0 405 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 ZNF138P52744 262 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 HES1Q14469 280 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 KLF17Q5JT82 389 aaPredicted RBP14.76□□□□□ -0.05
CPSF3-201ENST00000238112 MAP1LC3CQ9BXW4 147 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 TMEM191AQ9H0A3 160 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 ST20Q9HBF5 79 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 S4R3C0 116 aa14.76□□□□□ -0.05
CPSF3-201ENST00000238112 TRAV30A0A087WSZ9 112 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 CSN3P07498 182 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 PRB4P10163 310 aaPredicted RBP14.75□□□□□ -0.05
CPSF3-201ENST00000238112 OR11H6Q8NGC7 330 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 ZNF414Q96IQ9 312 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 WI2-2373I1.2A0A1W2PRP0 233 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 DMRTA1Q5VZB9 504 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 NPBQ8NG41 125 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 CFHR4Q92496 578 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 TPPP3Q9BW30 176 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 AAMDCQ9H7C9 122 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 HSPB8Q9UJY1 196 aa14.75□□□□□ -0.05
CPSF3-201ENST00000238112 A0A1B0GW15 77 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 HSBP1L1C9JCN9 74 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 NDUFA3O95167 84 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 CT45A10P0DMU9 189 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 GRNP28799 593 aaKnown RBP14.74□□□□□ -0.05
CPSF3-201ENST00000238112 Q6AWC8 147 aa14.74□□□□□ -0.05
CPSF3-201ENST00000238112 TMUB1Q9BVT8 246 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms