RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeast

Gene SHU2, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHU2	YDR078C	MRPL13	Q02204	264 aa		4.63	□□□□□ -1.67
SHU2	YDR078C	OPY2	Q06810	360 aa		4.63	□□□□□ -1.67
SHU2	YDR078C	CHS5	Q12114	671 aa	Known RBP	4.63	□□□□□ -1.67
SHU2	YDR078C	CLF1	Q12309	687 aa	Predicted RBP	4.63	□□□□□ -1.67
SHU2	YDR078C	POL3	P15436	1097 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	NCP1	P16603	691 aa	Known RBP	4.62	□□□□□ -1.67
SHU2	YDR078C	HCM1	P25364	564 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	EHT1	P38295	451 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
SHU2	YDR078C	ERP2	P39704	215 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	SMK1	P41808	388 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	ACS1	Q01574	713 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	TIM50	Q02776	476 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	COG4	Q06096	861 aa		4.62	□□□□□ -1.67
SHU2	YDR078C	NEW1	Q08972	1196 aa	Known RBP	4.62	□□□□□ -1.67
SHU2	YDR078C	SIR3	P06701	978 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	UBC1	P21734	215 aa	Known RBP	4.61	□□□□□ -1.67
SHU2	YDR078C	RPA135	P22138	1203 aa	Known RBP	4.61	□□□□□ -1.67
SHU2	YDR078C	CLB4	P24871	460 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	ERG4	P25340	473 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	PRP45	P28004	379 aa	Predicted RBP	4.61	□□□□□ -1.67
SHU2	YDR078C	EFT1	P32324	842 aa	Known RBP	4.61	□□□□□ -1.67
SHU2	YDR078C	MCM10	P32354	571 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	MSS1	P32559	526 aa	Predicted RBP	4.61	□□□□□ -1.67
SHU2	YDR078C	YBR138C	P38277	524 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	RAD26	P40352	1085 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	YJL163C	P46996	555 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	IRC13	Q08630	104 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	TRM13	Q12383	476 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	ZRT2	Q12436	422 aa		4.61	□□□□□ -1.67
SHU2	YDR078C	NUC1	P08466	329 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	PCK1	P10963	549 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	SEC12	P11655	471 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	VPS33	P20795	691 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	SWI4	P25302	1093 aa	Known RBP	4.6	□□□□□ -1.67
SHU2	YDR078C	RER1	P25560	188 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	HIS7	P33734	552 aa	Known RBP	4.6	□□□□□ -1.67
SHU2	YDR078C	RRN3	P36070	627 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	REV7	P38927	245 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	FMP52	P40008	231 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	TMN3	P40071	706 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	LRO1	P40345	661 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	POL31	P46957	487 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	MPS3	P47069	682 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	PAN2	P53010	1115 aa	Predicted RBP	4.6	□□□□□ -1.67
SHU2	YDR078C	IMA1	P53051	589 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	ENT2	Q05785	613 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	ADY4	Q05955	493 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	TFC6	Q06339	672 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	FRE5	Q08908	694 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	NTO1	Q12311	748 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	RRI2	Q12348	645 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	YKL033W-A	Q86ZR7	236 aa		4.6	□□□□□ -1.67
SHU2	YDR078C	ADE3	P07245	946 aa	Known RBP	4.59	□□□□□ -1.67
SHU2	YDR078C	RIT1	P23796	513 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	GFD2	P25370	566 aa	Known RBP	4.59	□□□□□ -1.67
SHU2	YDR078C	NTH1	P32356	751 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	RPN12	P32496	274 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	NPR3	P38742	1146 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	YJL193W	P39542	402 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	VFA1	P40080	203 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	PSF2	P40359	213 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	FAF1	P40546	346 aa	Predicted RBP	4.59	□□□□□ -1.67
SHU2	YDR078C	BNA1	P47096	177 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	YGR054W	P53235	642 aa	Known RBP	4.59	□□□□□ -1.67
SHU2	YDR078C	FHN1	P53279	174 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	TRS31	Q03337	283 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	ARA2	Q04212	335 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	YMR018W	Q04364	514 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	ARR3	Q06598	404 aa		4.59	□□□□□ -1.67
SHU2	YDR078C	CHS3	P29465	1165 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	SLC1	P33333	303 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	MRPL36	P36531	177 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	CTP1	P38152	299 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	CHS7	P38843	316 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	YEL025C	P39991	1188 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	KAP123	P40069	1113 aa	Known RBP	4.58	□□□□□ -1.68
SHU2	YDR078C	CAB2	P40506	365 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	MNT3	P40549	630 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	AIM21	P40563	679 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	CTF18	P49956	741 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	PHO23	P50947	330 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	MEP3	P53390	489 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	CTF4	Q01454	927 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	VPS64	Q03944	604 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	IZH3	Q07959	543 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	YOL087C	Q99247	1116 aa		4.58	□□□□□ -1.68
SHU2	YDR078C	SNF1	P06782	633 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	BIK1	P11709	440 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	HRR25	P29295	494 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	PMI40	P29952	429 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	RPT3	P33298	428 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	DEF1	P35732	738 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	PHO11	P35842	467 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	IFA38	P38286	347 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	PHO12	P38693	467 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	STB5	P38699	743 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	FSH1	P38777	243 aa	Known RBP	4.57	□□□□□ -1.68
SHU2	YDR078C	KHA1	P40309	873 aa		4.57	□□□□□ -1.68
SHU2	YDR078C	TEL2	P53038	688 aa		4.57	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 99.9 ms