RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 OTUD5Q96G74 571 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 PTPN18Q99952 460 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 ARAP2Q8WZ64 1704 aa12.74□□□□□ -0.37
SCN1A-222ENST00000642141 SOX10P56693 466 aa12.73□□□□□ -0.37
SCN1A-222ENST00000642141 INHBEP58166 350 aa12.73□□□□□ -0.37
SCN1A-222ENST00000642141 TBC1D9Q6ZT07 1266 aa12.73□□□□□ -0.37
SCN1A-222ENST00000642141 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.73□□□□□ -0.37
SCN1A-222ENST00000642141 WRNIP1Q96S55 665 aa12.73□□□□□ -0.37
SCN1A-222ENST00000642141 AKAP2Q9Y2D5 859 aa12.73□□□□□ -0.37
SCN1A-222ENST00000642141 CSADQ9Y600 493 aa12.73□□□□□ -0.37
SCN1A-222ENST00000642141 FKTNO75072 461 aa12.72□□□□□ -0.37
SCN1A-222ENST00000642141 OS9Q13438 667 aaPredicted RBP12.72□□□□□ -0.37
SCN1A-222ENST00000642141 MVPQ14764 893 aaKnown RBP12.72□□□□□ -0.37
SCN1A-222ENST00000642141 FAM83AQ86UY5 434 aa12.72□□□□□ -0.37
SCN1A-222ENST00000642141 DZIP1Q86YF9 867 aaKnown RBP12.72□□□□□ -0.37
SCN1A-222ENST00000642141 POTEDQ86YR6 584 aa12.72□□□□□ -0.37
SCN1A-222ENST00000642141 PANK1Q8TE04 598 aa12.72□□□□□ -0.37
SCN1A-222ENST00000642141 UNCXA6NJT0 531 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 SEMA3EO15041 775 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 ALDH1A1P00352 501 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 INPP5BP32019 993 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 CRHR2Q13324 411 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 FKBP1CQ5VVH2 108 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 FAM151AQ8WW52 585 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 BRI3BPQ8WY22 251 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 MS4A4AQ96JQ5 239 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 SNRKQ9NRH2 765 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 HMG20BQ9P0W2 317 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 FAM198AQ9UFP1 575 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 HPS5Q9UPZ3 1129 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 SNCAIPQ9Y6H5 919 aa12.71□□□□□ -0.37
SCN1A-222ENST00000642141 SALL1Q9NSC2 1324 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 CCL15-CCL14A0A0B4J2E2 113 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 SURF6O75683 361 aaKnown RBP12.7□□□□□ -0.38
SCN1A-222ENST00000642141 SLURP2P0DP57 97 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 ATP8B2P98198 1209 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 MECOMQ03112 1051 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 CCL15Q16663 113 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 OTUD7BQ6GQQ9 843 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 SPATA5Q8NB90 893 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 BCL11AQ9H165 835 aa12.7□□□□□ -0.38
SCN1A-222ENST00000642141 ZBED9Q6R2W3 1325 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 MYH13Q9UKX3 1938 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 IRF6O14896 467 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 ZBTB7BO15156 539 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-222ENST00000642141 ECM2O94769 699 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-222ENST00000642141 RGS3P49796 1198 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 MLLT1Q03111 559 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-222ENST00000642141 PICALMQ13492 652 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 POLA2Q14181 598 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 DCAF15Q66K64 600 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 SPTY2D1Q68D10 685 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-222ENST00000642141 ERICH6Q7L0X2 663 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 ZSCAN29Q8IWY8 852 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-222ENST00000642141 FAM43AQ8N2R8 423 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 ZGPATQ8N5A5 531 aaKnown RBP12.69□□□□□ -0.38
SCN1A-222ENST00000642141 CD99L2Q8TCZ2 262 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 HOOK2Q96ED9 719 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 ZNF341Q9BYN7 854 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 RAI14Q9P0K7 980 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 TRIM17Q9Y577 477 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 OTOFQ9HC10 1997 aa12.69□□□□□ -0.38
SCN1A-222ENST00000642141 TESPA1A2RU30 521 aaPredicted RBP12.68□□□□□ -0.38
SCN1A-222ENST00000642141 SPDYE5A6NIY4 337 aa12.68□□□□□ -0.38
SCN1A-222ENST00000642141 BTDP43251 543 aa12.68□□□□□ -0.38
SCN1A-222ENST00000642141 GTF2A2P52657 109 aa12.68□□□□□ -0.38
SCN1A-222ENST00000642141 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.68□□□□□ -0.38
SCN1A-222ENST00000642141 SSH3Q8TE77 659 aa12.68□□□□□ -0.38
SCN1A-222ENST00000642141 ZNF384Q8TF68 577 aa12.68□□□□□ -0.38
SCN1A-222ENST00000642141 CFHR5Q9BXR6 569 aa12.68□□□□□ -0.38
SCN1A-222ENST00000642141 MCAMP43121 646 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 CAP1Q01518 475 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 PKN2Q16513 984 aaKnown RBP12.67□□□□□ -0.38
SCN1A-222ENST00000642141 TNNI3KQ59H18 835 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 TTC39AQ5SRH9 613 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 SH3BP5LQ7L8J4 393 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 ERO1BQ86YB8 467 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 SLF2Q8IX21 1173 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 DBNDD2Q9BQY9 259 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 DDX4Q9NQI0 724 aaKnown RBP12.67□□□□□ -0.38
SCN1A-222ENST00000642141 LRP2BPQ9P2M1 347 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 FPGT-TNNI3KV9GXZ4 949 aa12.67□□□□□ -0.38
SCN1A-222ENST00000642141 GAKO14976 1311 aa12.66□□□□□ -0.38
SCN1A-222ENST00000642141 DDTLA6NHG4 134 aaPredicted RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 WDHD1O75717 1129 aaPredicted RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 ARID4AP29374 1257 aaPredicted RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 RGS19P49795 217 aa12.66□□□□□ -0.38
SCN1A-222ENST00000642141 SP3Q02447 781 aa12.66□□□□□ -0.38
SCN1A-222ENST00000642141 SNAPC2Q13487 334 aa12.66□□□□□ -0.38
SCN1A-222ENST00000642141 TAF1CQ15572 869 aaPredicted RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 NOM1Q5C9Z4 860 aaKnown RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 FBXO46Q6PJ61 603 aaPredicted RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 OTOP1Q7RTM1 612 aa12.66□□□□□ -0.38
SCN1A-222ENST00000642141 CCDC8Q9H0W5 538 aaPredicted RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 TLR7Q9NYK1 1049 aaKnown RBP12.66□□□□□ -0.38
SCN1A-222ENST00000642141 MROH7-TTC4A0A0A0MT08 1334 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 AK9Q5TCS8 1911 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 FAM196BA6NMK8 535 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 BTBD19C9JJ37 291 aa12.65□□□□□ -0.38
SCN1A-222ENST00000642141 APBB1O00213 710 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms