RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 ALDH1L1O75891 902 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 ECM2O94769 699 aaPredicted RBP9.84□□□□□ -0.83
CLK1-215ENST00000621181 METTL24Q5JXM2 366 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 ZKSCAN4Q969J2 545 aaPredicted RBP9.84□□□□□ -0.83
CLK1-215ENST00000621181 SUCLG2Q96I99 432 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 ARHGAP39Q9C0H5 1083 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 ZCCHC17Q9NP64 241 aaKnown RBP9.84□□□□□ -0.83
CLK1-215ENST00000621181 SNCAIPQ9Y6H5 919 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 GNRH1P01148 92 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 HDLBPQ00341 1268 aaKnown RBP9.84□□□□□ -0.83
CLK1-215ENST00000621181 GRIK5Q16478 980 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 DCAF15Q66K64 600 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 ZDHHC15Q96MV8 337 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 MRS2Q9HD23 443 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 RIPOR2Q9Y4F9 1068 aa9.84□□□□□ -0.83
CLK1-215ENST00000621181 NBPF7P0C2Y1 421 aaPredicted RBP9.83□□□□□ -0.84
CLK1-215ENST00000621181 FBXO33Q7Z6M2 555 aa9.83□□□□□ -0.84
CLK1-215ENST00000621181 FAM83AQ86UY5 434 aa9.83□□□□□ -0.84
CLK1-215ENST00000621181 BICC1Q9H694 974 aaKnown RBP9.83□□□□□ -0.84
CLK1-215ENST00000621181 TSHZ2Q9NRE2 1034 aa9.83□□□□□ -0.84
CLK1-215ENST00000621181 MAST3O60307 1309 aa9.83□□□□□ -0.84
CLK1-215ENST00000621181 H0YGN5 161 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 PPIL2Q13356 520 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 LRRC24Q50LG9 513 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 MIGA2Q7L4E1 593 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.82□□□□□ -0.84
CLK1-215ENST00000621181 KAZALD1Q96I82 304 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 ZSWIM8A7E2V4 1837 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 PDE8BO95263 885 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 BCAMP50895 628 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 PRMT2P55345 433 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 FKBP1CQ5VVH2 108 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 APOBEC3HQ6NTF7 200 aaKnown RBP9.82□□□□□ -0.84
CLK1-215ENST00000621181 RAET1EQ8TD07 263 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 DPF3Q92784 378 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 CPA4Q9UI42 421 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 SUGT1Q9Y2Z0 365 aa9.82□□□□□ -0.84
CLK1-215ENST00000621181 AK9Q5TCS8 1911 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 FMNL1O95466 1100 aaPredicted RBP9.81□□□□□ -0.84
CLK1-215ENST00000621181 HOXD10P28358 340 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 INPP5BP32019 993 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 PSMC4P43686 418 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 PPATQ06203 517 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 MRIQ9BWK5 157 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 ZNF341Q9BYN7 854 aa9.81□□□□□ -0.84
CLK1-215ENST00000621181 RPAP1Q9BWH6 1393 aaPredicted RBP9.81□□□□□ -0.84
CLK1-215ENST00000621181 PDHXO00330 501 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 IFIT1P09914 478 aaKnown RBP9.8□□□□□ -0.84
CLK1-215ENST00000621181 TCP10Q12799 353 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 MTFR1Q15390 333 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 PUM3Q15397 648 aaKnown RBP9.8□□□□□ -0.84
CLK1-215ENST00000621181 RABL6Q3YEC7 729 aaPredicted RBP9.8□□□□□ -0.84
CLK1-215ENST00000621181 C17orf99Q6UX52 265 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 VGLL2Q8N8G2 317 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 NKX2-3Q8TAU0 364 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 BIN2Q9UBW5 565 aaPredicted RBP9.8□□□□□ -0.84
CLK1-215ENST00000621181 SRRDQ9UH36 339 aa9.8□□□□□ -0.84
CLK1-215ENST00000621181 UTYO14607 1347 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 GRK4P32298 578 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 HHIPL2Q6UWX4 724 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 ANKRD23Q86SG2 305 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 KLHDC4Q8TBB5 520 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 TRIM47Q96LD4 638 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 LAMA3Q16787 3333 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 A0A0C4DFX4 3053 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 OSBPP22059 807 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 ANKRD44Q8N8A2 993 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 WDR66Q8TBY9 1149 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 FAM151AQ8WW52 585 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 SHISA4Q96DD7 197 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 RNF208Q9H0X6 261 aa9.79□□□□□ -0.84
CLK1-215ENST00000621181 COL6A3P12111 3177 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 MYPNQ86TC9 1320 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 KIF16BQ96L93 1317 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 SLC5A1P13866 664 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 CTGFP29279 349 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 PARK7Q99497 189 aaKnown RBP9.78□□□□□ -0.84
CLK1-215ENST00000621181 HTATIP2Q9BUP3 242 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 MYH13Q9UKX3 1938 aa9.78□□□□□ -0.84
CLK1-215ENST00000621181 GJB1P08034 283 aa9.77□□□□□ -0.84
CLK1-215ENST00000621181 GJA8P48165 433 aa9.77□□□□□ -0.84
CLK1-215ENST00000621181 FCGRTP55899 365 aa9.77□□□□□ -0.84
CLK1-215ENST00000621181 UBXN2AP68543 259 aa9.77□□□□□ -0.84
CLK1-215ENST00000621181 DIXDC1Q155Q3 683 aa9.77□□□□□ -0.84
CLK1-215ENST00000621181 RBM27Q9P2N5 1060 aaKnown RBP9.77□□□□□ -0.84
CLK1-215ENST00000621181 KCNH4Q9UQ05 1017 aa9.77□□□□□ -0.84
CLK1-215ENST00000621181 PRR29P0C7W0 189 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 CCL5P13501 91 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 FGFR2P21802 821 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 PRDX5P30044 214 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 PRKCZQ05513 592 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 NFIAQ12857 509 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 CDC42EP5Q6NZY7 148 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 LPIN2Q92539 896 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 ZNF112Q9UJU3 913 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 DAGLAQ9Y4D2 1042 aa9.77□□□□□ -0.85
CLK1-215ENST00000621181 PTPRCP08575 1304 aa9.76□□□□□ -0.85
CLK1-215ENST00000621181 ADGRA2Q96PE1 1338 aa9.76□□□□□ -0.85
CLK1-215ENST00000621181 LDHBP07195 334 aaKnown RBP9.76□□□□□ -0.85
CLK1-215ENST00000621181 CYP2C8P10632 490 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms