RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 COL1A1P02452 1464 aaPredicted RBP11.66□□□□□ -0.54
VTA1-205ENST00000620996 IFIT3O14879 490 aaKnown RBP11.66□□□□□ -0.54
VTA1-205ENST00000620996 ZSCAN23Q3MJ62 389 aa11.66□□□□□ -0.54
VTA1-205ENST00000620996 FBXO33Q7Z6M2 555 aa11.66□□□□□ -0.54
VTA1-205ENST00000620996 NSUN7Q8NE18 718 aaKnown RBP11.66□□□□□ -0.54
VTA1-205ENST00000620996 MYL10Q9BUA6 226 aa11.66□□□□□ -0.54
VTA1-205ENST00000620996 KIF3AQ9Y496 699 aa11.66□□□□□ -0.54
VTA1-205ENST00000620996 MYH7P12883 1935 aa11.66□□□□□ -0.54
VTA1-205ENST00000620996 GPSM2P81274 684 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 MECOMQ03112 1051 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 BRWD3Q6RI45 1802 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 CYP2D7A0A087X1C5 515 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 SYCE3A1L190 88 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 C4AP0C0L4 1744 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 NKX2-3Q8TAU0 364 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 XDHP47989 1333 aa11.65□□□□□ -0.54
VTA1-205ENST00000620996 GOLGA6L4A6NEF3 574 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 KRT85P78386 507 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 GAS2L3Q86XJ1 694 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 ANGEL1Q9UNK9 670 aaKnown RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 RIMBP2O15034 1052 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 PRDM1O75626 825 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 HMGN5P82970 282 aaKnown RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 CSPP1Q1MSJ5 1256 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 AKNAD1Q5T1N1 836 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 ZNF804AQ7Z570 1209 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 COL23A1Q86Y22 540 aaPredicted RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 ZNF274Q96GC6 653 aaPredicted RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 PANK2Q9BZ23 570 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 GRPEL1Q9HAV7 217 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 TMEM63CQ9P1W3 806 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 GGA1Q9UJY5 639 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 TNRC6CQ9HCJ0 1690 aaKnown RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 ARAP2Q8WZ64 1704 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 ERICH2A1L162 156 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 CCDC69A6NI79 296 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 POLRMTO00411 1230 aaKnown RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 CTDNEP1O95476 244 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 METAP2P50579 478 aaKnown RBP eCLIP11.64□□□□□ -0.55
VTA1-205ENST00000620996 PLCD3Q8N3E9 789 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 SENP2Q9HC62 589 aa11.64□□□□□ -0.55
VTA1-205ENST00000620996 ZNF219Q9P2Y4 722 aaPredicted RBP11.64□□□□□ -0.55
VTA1-205ENST00000620996 DHX16O60231 1041 aaKnown RBP11.63□□□□□ -0.55
VTA1-205ENST00000620996 PPARAQ07869 468 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 OTUD7BQ6GQQ9 843 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 SYNE3Q6ZMZ3 975 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 SYAP1Q96A49 352 aaPredicted RBP11.63□□□□□ -0.55
VTA1-205ENST00000620996 SMIM22K7EJ46 135 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 SEMA3EO15041 775 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 LDHBP07195 334 aaKnown RBP11.63□□□□□ -0.55
VTA1-205ENST00000620996 MMP10P09238 476 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 XRCC6P12956 609 aaKnown RBP eCLIP11.63□□□□□ -0.552e-7■■■■■ 30.5
VTA1-205ENST00000620996 NUP133Q8WUM0 1156 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 LLPHQ9BRT6 129 aaKnown RBP11.63□□□□□ -0.55
VTA1-205ENST00000620996 KRT23Q9C075 422 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 ORC3Q9UBD5 711 aaPredicted RBP11.63□□□□□ -0.55
VTA1-205ENST00000620996 LEMD3Q9Y2U8 911 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 PNPLA7Q6ZV29 1317 aa11.63□□□□□ -0.55
VTA1-205ENST00000620996 GOLGA8AA7E2F4 631 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 RANBP6O60518 1105 aaKnown RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 MRE11P49959 708 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 SART3Q15020 963 aaKnown RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 CCDC82Q8N4S0 544 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 NSUN4Q96CB9 384 aaKnown RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 UBAC1Q9BSL1 405 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 CNNM2Q9H8M5 875 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 ZSWIM5Q9P217 1185 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 PARP3Q9Y6F1 533 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 LAMA4Q16363 1823 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 SH2B2O14492 632 aaPredicted RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 ALX1Q15699 326 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 ZNF622Q969S3 477 aaKnown RBP eCLIP11.62□□□□□ -0.552e-6■■■□□ 15.2
VTA1-205ENST00000620996 SPATA32Q96LK8 384 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 NOL10Q9BSC4 688 aaKnown RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 AGXT2Q9BYV1 514 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 PRDM4Q9UKN5 801 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 SLC12A7Q9Y666 1083 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 COL24A1Q17RW2 1714 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 G3V3G9 751 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 ZBTB43O43298 467 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 ADD1P35611 737 aaKnown RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 USP5P45974 858 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 DIXDC1Q155Q3 683 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 DCAF8Q5TAQ9 597 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 SPTY2D1Q68D10 685 aaPredicted RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 NLGN1Q8N2Q7 840 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 CHMP4CQ96CF2 233 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 CRNKL1Q9BZJ0 848 aaKnown RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 TMX4Q9H1E5 349 aaPredicted RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 RNF41Q9H4P4 317 aaPredicted RBP11.62□□□□□ -0.55
VTA1-205ENST00000620996 PRDM10Q9NQV6 1147 aa11.62□□□□□ -0.55
VTA1-205ENST00000620996 PPEF1O14829 653 aaPredicted RBP11.61□□□□□ -0.55
VTA1-205ENST00000620996 CPLX2Q6PUV4 134 aaKnown RBP11.61□□□□□ -0.55
VTA1-205ENST00000620996 OLFM4Q6UX06 510 aa11.61□□□□□ -0.55
VTA1-205ENST00000620996 PHKBQ93100 1093 aa11.61□□□□□ -0.55
VTA1-205ENST00000620996 C8orf76Q96K31 380 aa11.61□□□□□ -0.55
VTA1-205ENST00000620996 FSD2A1L4K1 749 aa11.61□□□□□ -0.55
VTA1-205ENST00000620996 UBE2HP62256 183 aa11.61□□□□□ -0.55
VTA1-205ENST00000620996 GNL2Q13823 731 aaKnown RBP11.61□□□□□ -0.55
VTA1-205ENST00000620996 WTAPQ15007 396 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms