RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NEURL4Q96JN8 1562 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 SPATA31A3Q5VYP0 1347 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 A0A087WWV3 80 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 FGAP02671 866 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 TMEM266Q2M3C6 531 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 CCDC178Q5BJE1 867 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 KIF2CQ99661 725 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 COPRSQ9NQ92 184 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 V9GY48 417 aaPredicted RBP10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 MAST3O60307 1309 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 CHGBP05060 677 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 ERFEQ4G0M1 354 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 BRAPQ7Z569 592 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 TMTC2Q8N394 836 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 BMP2KQ9NSY1 1161 aaPredicted RBP10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 TNS3Q68CZ2 1445 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 CYP21A2P08686 494 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 FAM160A1Q05DH4 1040 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 PPARAQ07869 468 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 CCDC181Q5TID7 509 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 CTNND2Q9UQB3 1225 aa10.22□□□□□ -0.77
PDLIM5-222ENST00000615540 PATL2C9JE40 543 aaKnown RBP10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 PNOCQ13519 176 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 ZSWIM4Q9H7M6 989 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 CLIC4Q9Y696 253 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 IDEP14735 1019 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 PPP4R3BQ5MIZ7 849 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 ZFYVE27Q5T4F4 411 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 CALML4Q96GE6 196 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 LLPHQ9BRT6 129 aaKnown RBP10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 MMRN2Q9H8L6 949 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 FER1L4A9Z1Z3 1794 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 HLA-DOAP06340 250 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 USPL1Q5W0Q7 1092 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 KIF18AQ8NI77 898 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 TGFBRAP1Q8WUH2 860 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 GPCPD1Q9NPB8 672 aa10.21□□□□□ -0.77
PDLIM5-222ENST00000615540 ZSCAN12O43309 604 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 MTIF2P46199 727 aaKnown RBP10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 GSDMDP57764 484 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 KRT40Q6A162 431 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 MAPKAPK5Q8IW41 473 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 IFNL3Q8IZI9 196 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 NCAPD2Q15021 1401 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 PRKAB2O43741 272 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 PDE6AP16499 860 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 MATR3P43243 847 aaKnown RBP eCLIP10.21□□□□□ -0.781e-6■■■□□ 17.1
PDLIM5-222ENST00000615540 MTERF4Q7Z6M4 381 aaKnown RBP10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 EXOC1Q9NV70 894 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 VPS54Q9P1Q0 977 aa10.21□□□□□ -0.78
PDLIM5-222ENST00000615540 TRIM75PA6NK02 468 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 MSL1Q68DK7 614 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 MAP7D2Q96T17 732 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 TSG101Q99816 390 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 TM6SF1Q9BZW5 370 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 TCP11L1Q9NUJ3 509 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 PFKFB2O60825 505 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 PDIA3P30101 505 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 UBA7P41226 1012 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 TRIM47Q96LD4 638 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 IFT172Q9UG01 1749 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 ERICH4A6NGS2 130 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 ZMYM1Q5SVZ6 1142 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 KRI1Q8N9T8 703 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 CCDC150Q8NCX0 1101 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 OSBP2Q969R2 916 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.2□□□□□ -0.781e-6■■■■□ 20.7
PDLIM5-222ENST00000615540 FAM170AA1A519 330 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 FKBP15Q5T1M5 1219 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 ZNF397Q8NF99 534 aaPredicted RBP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 CUL5Q93034 780 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 LOC102724428A0A0B4J2F2 783 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 ADD1P35611 737 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 SIK1P57059 783 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 RRP36Q96EU6 259 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 TMEM87BQ96K49 555 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 CDCA7Q9BWT1 371 aaPredicted RBP10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 ELP1O95163 1332 aa10.2□□□□□ -0.78
PDLIM5-222ENST00000615540 HSP90B2PQ58FF3 399 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 TEX11Q8IYF3 940 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 CCDC12Q8WUD4 166 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 PIH1D3Q9NQM4 214 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 INCENPQ9NQS7 918 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 RBM28Q9NW13 759 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 KIF5CO60282 957 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 DYNLL1P63167 89 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 GPR101Q96P66 508 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 GPHNQ9NQX3 736 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 PARP3Q9Y6F1 533 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 POLR2DO15514 142 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 CIAO1O76071 339 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 KANK3Q6NY19 840 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 NLRP10Q86W26 655 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 USP28Q96RU2 1077 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 MAPK8IP1Q9UQF2 711 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 C1orf167Q5SNV9 1468 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 GPIHBP1Q8IV16 184 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 CLIC6Q96NY7 704 aa10.19□□□□□ -0.78
PDLIM5-222ENST00000615540 ADGRB2O60241 1585 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms