RNA–Protein interactions for RNA: ENST00000585448.1

SMAD4-203, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-203ENST00000585448 TICAM2Q86XR7 235 aa7.72□□□□□ -1.17
SMAD4-203ENST00000585448 DZIP1LQ8IYY4 767 aaKnown RBP7.72□□□□□ -1.17
SMAD4-203ENST00000585448 WFDC12Q8WWY7 111 aa7.72□□□□□ -1.17
SMAD4-203ENST00000585448 TRIM56Q9BRZ2 755 aaKnown RBP7.72□□□□□ -1.17
SMAD4-203ENST00000585448 BCL2L13Q9BXK5 485 aa7.72□□□□□ -1.17
SMAD4-203ENST00000585448 CEP44Q9C0F1 390 aa7.72□□□□□ -1.17
SMAD4-203ENST00000585448 TMEM39AQ9NV64 488 aa7.72□□□□□ -1.17
SMAD4-203ENST00000585448 SYNGAP1Q96PV0 1343 aa7.72□□□□□ -1.17
SMAD4-203ENST00000585448 LOC100289279A0A1B0GTE1 492 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 WISP1O95388 367 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 USP17L7P0C7H9 530 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 NOS3P29474 1203 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 XPCQ01831 940 aaPredicted RBP7.71□□□□□ -1.18
SMAD4-203ENST00000585448 PPP2R3AQ06190 1150 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 DUOXA2Q1HG44 320 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 SCARA3Q6AZY7 606 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 KIAA1211Q6ZU35 1233 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 RNF208Q9H0X6 261 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 SUGCTQ9HAC7 445 aa7.71□□□□□ -1.18
SMAD4-203ENST00000585448 RBM47A0AV96 593 aaKnown RBP7.7□□□□□ -1.18
SMAD4-203ENST00000585448 MCCP23508 829 aa7.7□□□□□ -1.18
SMAD4-203ENST00000585448 ST13P50502 369 aaKnown RBP7.7□□□□□ -1.18
SMAD4-203ENST00000585448 GSTM4Q03013 218 aa7.7□□□□□ -1.18
SMAD4-203ENST00000585448 NECAB3Q96P71 396 aaPredicted RBP7.7□□□□□ -1.18
SMAD4-203ENST00000585448 TMPRSS13Q9BYE2 586 aa7.7□□□□□ -1.18
SMAD4-203ENST00000585448 ISY1Q9ULR0 285 aaKnown RBP7.7□□□□□ -1.18
SMAD4-203ENST00000585448 CCDC9Q9Y3X0 531 aaKnown RBP7.7□□□□□ -1.18
SMAD4-203ENST00000585448 DDX3YO15523 660 aaKnown RBP7.69□□□□□ -1.18
SMAD4-203ENST00000585448 SORBS3O60504 671 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 NLRP12P59046 1061 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 PSMD2Q13200 908 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 UVSSAQ2YD98 709 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 GPAT2Q6NUI2 795 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 ACAD11Q709F0 780 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 CNPY4Q8N129 248 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 UBASH3BQ8TF42 649 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 CRELD1Q96HD1 420 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 CEP41Q9BYV8 373 aa7.69□□□□□ -1.18
SMAD4-203ENST00000585448 NACADO15069 1562 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 MRPL58Q14197 206 aaKnown RBP7.68□□□□□ -1.18
SMAD4-203ENST00000585448 POU4F3Q15319 338 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 DNTTIP2Q5QJE6 756 aaKnown RBP7.68□□□□□ -1.18
SMAD4-203ENST00000585448 EXOSC6Q5RKV6 272 aaKnown RBP7.68□□□□□ -1.18
SMAD4-203ENST00000585448 ANKRD34AQ69YU3 496 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 SV2BQ7L1I2 683 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 SMG8Q8ND04 991 aaKnown RBP7.68□□□□□ -1.18
SMAD4-203ENST00000585448 GIPC2Q8TF65 315 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 KRT82Q9NSB4 513 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 RNF19AQ9NV58 838 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 AKAP2Q9Y2D5 859 aa7.68□□□□□ -1.18
SMAD4-203ENST00000585448 ENC1O14682 589 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 CLSTN1O94985 981 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 ZNF16P17020 682 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 NME2P22392 152 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 IREB2P48200 963 aaKnown RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 FAM193AP78312 1265 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 IRX6P78412 446 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 HNRNPUQ00839 825 aaKnown RBP eCLIP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 TAGLNQ01995 201 aaKnown RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 PDZD3Q86UT5 571 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 DNAJC2Q99543 621 aaKnown RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 CORO1BQ9BR76 489 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 POLR3GLQ9BT43 218 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 RUSC1Q9BVN2 902 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 YY1AP1Q9H869 796 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 CACNA2D2Q9NY47 1150 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 GPN3Q9UHW5 284 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 ZHX1Q9UKY1 873 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 DHX57Q6P158 1386 aaKnown RBP7.67□□□□□ -1.18
SMAD4-203ENST00000585448 USP31Q70CQ4 1352 aa7.67□□□□□ -1.18
SMAD4-203ENST00000585448 H2AFB1P0C5Y9 115 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 H2AFB2P0C5Z0 115 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 MAOBP27338 520 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 FAM46AQ96IP4 442 aaKnown RBP7.66□□□□□ -1.18
SMAD4-203ENST00000585448 MEGF10Q96KG7 1140 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 EMILIN2Q9BXX0 1053 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 BACH2Q9BYV9 841 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 CYP4F12Q9HCS2 524 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 HDAC5Q9UQL6 1122 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 SAMM50Q9Y512 469 aa7.66□□□□□ -1.18
SMAD4-203ENST00000585448 ZCCHC6Q5VYS8 1495 aaKnown RBP7.66□□□□□ -1.18
SMAD4-203ENST00000585448 TIAF1O95411 115 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 DLGAP3O95886 979 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 GSTP1P09211 210 aaKnown RBP7.65□□□□□ -1.18
SMAD4-203ENST00000585448 CTSHP09668 335 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 VAMP1P23763 118 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 ZNF252P-AS1Q0IIN9 211 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 NOC4LQ9BVI4 516 aaKnown RBP7.65□□□□□ -1.18
SMAD4-203ENST00000585448 USP26Q9BXU7 913 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 MRS2Q9HD23 443 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 HIF3AQ9Y2N7 669 aa7.65□□□□□ -1.18
SMAD4-203ENST00000585448 APPP05067 770 aa7.64□□□□□ -1.19
SMAD4-203ENST00000585448 ARNTP27540 789 aa7.64□□□□□ -1.19
SMAD4-203ENST00000585448 MRE11P49959 708 aa7.64□□□□□ -1.19
SMAD4-203ENST00000585448 RPS26P62854 115 aaKnown RBP7.64□□□□□ -1.19
SMAD4-203ENST00000585448 TPTE2Q6XPS3 522 aa7.64□□□□□ -1.19
SMAD4-203ENST00000585448 SULF2Q8IWU5 870 aa7.64□□□□□ -1.19
SMAD4-203ENST00000585448 AGGF1Q8N302 714 aaeCLIP7.64□□□□□ -1.19
SMAD4-203ENST00000585448 CCDC94Q9BW85 323 aaPredicted RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms